PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G22460.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 457aa    MW: 49871.8 Da    PI: 9.573
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G22460.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.8e-12155183533
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                      k  rr+++NReAAr+sR+RKka+i++Le+
  ORUFI06G22460.2 155 KTLRRLAQNREAARKSRLRKKAYIQQLET 183
                      7789***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-9149195No hitNo description
SMARTSM003381.2E-5151223IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.565153182IPR004827Basic-leucine zipper domain
PfamPF001702.5E-9155183IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-7155185No hitNo description
PROSITE patternPS000360158173IPR004827Basic-leucine zipper domain
PfamPF141441.2E-25232306IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MSPPTAILPA LRLRRGGVTM EGQIRRATTG PGGYDMPSDL DQALLLYFDG QEQDKPSTQE  60
EPHKPLNFVK ETLNIFPSQP MDGEPTPTPK ASMSAPPIAG FSRRSPAPAA ADGRPLTLGK  120
TSKAAFKKEG GSGSGGAMAA SASSELKGPK TPDPKTLRRL AQNREAARKS RLRKKAYIQQ  180
LETGRIRLAH LEQEIQFTRA QGAFCGAGIL SPDAALFNLE YERWQEAHHQ VISRLRAAVE  240
EHRPDGELQP HVDEAMSHYG VLMAHKARLV GADPLHLLSG LWKGAVEQCF LWIGGFRPSE  300
LIKVVVRHVE PLTEQQLASV YSAQQAARQE EDALDGGLQA LLRSLSDVVS SSDAPSSSQQ  360
TPPVMYHPSA AAAMAAASFM GQYGSYSNLQ LAMDKLANLA IFLRQADEER MRTLHALRRM  420
LTVRQAARCF VAVDDYFGRL RALALFWTTT RPHPAAG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1199090.0AK119909.1 Oryza sativa Japonica Group cDNA clone:002-183-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643999.10.0transcription factor TGAL8 isoform X1
SwissprotQ69T210.0TGAL8_ORYSJ; Transcription factor TGAL8
TrEMBLA0A0E0Q0510.0A0A0E0Q051_ORYRU; Uncharacterized protein
STRINGORUFI06G22460.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.36e-93bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]