PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G24400.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 365aa    MW: 39441.1 Da    PI: 7.4258
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G24400.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.5e-073083412154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  ORUFI06G24400.3 308 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 341
                      569*****************************87 PP
2ELK29.12.3e-10262283122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELKh+L+++Y+++L+++++E++
  ORUFI06G24400.3 262 ELKHELKQGYREKLVDIREEIL 283
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-1993137IPR005540KNOX1
PfamPF037901.9E-1696133IPR005540KNOX1
SMARTSM012561.1E-25151206IPR005541KNOX2
PfamPF037918.1E-17159205IPR005541KNOX2
PfamPF037893.5E-6262283IPR005539ELK domain
SMARTSM011880.0014262283IPR005539ELK domain
PROSITE profilePS5121310.196262282IPR005539ELK domain
PROSITE profilePS5007111.596282345IPR001356Homeobox domain
SuperFamilySSF466891.33E-15284349IPR009057Homeodomain-like
SMARTSM003893.3E-10284349IPR001356Homeobox domain
CDDcd000861.05E-10285346No hitNo description
Gene3DG3DSA:1.10.10.603.0E-24289346IPR009057Homeodomain-like
PfamPF059204.1E-18302341IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSVTQVRGAS RLTPSLPPNC YNNKSSSSSS SSSSSSTSRA AAAAAVRVMA FHYQDHALAM  60
DAAAAAAETG GHHHPGFVGA GGVVGGGGGG GWEREKAAIA AHPLYERLLE AHVACLRVAT  120
PVDQLPRIDA QIAARPPPLA AATAAAAAAA AGGAPSGGEE LDLFMTHYVL LLCSFKEQLQ  180
QHVRVHAMEA VMACWELEQT LQSLTGASPR EGSGATMSDD EDNQVDSESN MFDGNDGSDG  240
MGFGPLMLTE GERSLVERVR QELKHELKQG YREKLVDIRE EILRKRRAGK LPGDTASTLK  300
AWWQAHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPASS SSDKSKRKRY  360
RVVDF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338358RKRNWHSNPASSSSDKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0618180.0AB061818.1 Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644389.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW40.0KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A0E0Q0T80.0A0A0E0Q0T8_ORYRU; Uncharacterized protein
STRINGORUFI06G24400.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-138KNOTTED1-like homeobox gene 3