PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G25490.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1354aa    MW: 153465 Da    PI: 8.6464
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G25490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.8e-1711301177148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                       rg WTteEde+l++++++ G g+W+t ++  g++R+ k+c++rw +yl
  ORUFI06G25490.1 1130 RGLWTTEEDEKLAQYIQKNGHGSWRTLPKLAGLNRSSKSCRLRWTNYL 1177
                       788*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147981.60E-714137No hitNo description
SuperFamilySSF525406.96E-49324590IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.1E-17345481IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009317.3E-49345617IPR002182NB-ARC
PRINTSPR003641.3E-12352367No hitNo description
PRINTSPR003641.3E-12425439No hitNo description
PRINTSPR003641.3E-12522536No hitNo description
SuperFamilySSF520581.21E-226561030IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.2E-15725892IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.3E-12826842No hitNo description
Gene3DG3DSA:3.80.10.106.2E-15924970IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5129421.2211251181IPR017930Myb domain
SMARTSM007177.2E-1311291179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-1911301177IPR009057Homeodomain-like
PfamPF002496.7E-1511301177IPR001005SANT/Myb domain
SuperFamilySSF466894.05E-2111301213IPR009057Homeodomain-like
CDDcd001672.28E-911331177No hitNo description
Gene3DG3DSA:1.10.10.602.7E-511781212IPR009057Homeodomain-like
PROSITE profilePS500904.05411821212IPR017877Myb-like domain
SMARTSM007175211831234IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1354 aa     Download sequence    Send to blast
MSSLVVMQAP MSCSLGALGP LLRKLDSLEN RLPKPLKEGM NLLKEEVEEI SADLVKMSSV  60
DSPSYRARCW MEEVRDLSYH MEDCIDSMLL KRSDANAKMR CVYGSRVGRV KIGRRHPKKL  120
KTSTRINKMT KITRIWKLMN LAWEAGERHW IAELRNLVRE ATKRRHKRYR PADGGASRPR  180
LVLTAHGRVP GPYWVAANLV GVAGLRNLLW EARDRHTRYR LDDDYASSSL NDPLDTAELE  240
KRVWEVRDRR HKRHRSDNDY ASSSSAHISP VFGFVDSDLD LILEDVVRVE QNRYKRYRLD  300
DGYDSSSVDV FPEDGWVHAP SRVGTTNLIG IYKPKAKLTN LVNDKTDLQL KVVCILGSAG  360
VGKTTLAEQV YRQLRRQFEC RALVRVSRRP DMRNLITTIL SQVHPRLKIS DSSTVQSLID  420
ILKEYLQKKR YLIVIDELCE AETWNIVNRA FPDDNNCSRI MTTTEIKEVA LNCRRNCSVN  480
IFDMVPLGIN NAKTLFFDRV FGPEQHCPNE LYEVASRIAE NCGGLPLSII SIAGLLASLP  540
QEMKLWCKVD ECLRSCVTTN TKVNGQILKE SINLSYNGLP HHLKTCLLYL SFYPEGFISC  600
TSDLLKQWVS EGFIPVIDGK DTGEVAESYF YELVNRGMIQ GVSTKYNNQV LSCTLHRIVF  660
DLIIQKSKEE KFITAIDYSK TMLQNSLEAR RLLLHFSNTR YATEVEGITL SHVRSFAFFG  720
LLKCMPSVME FKLLRVLILD FWGDHNGRKS FNVAGICRLF QLRYLKISSS ILIELPPQIG  780
CLKYLETLDI DATVSAVPSD IVHLPGLLHL HLRDDTNLPD EIGRIRSLQT LKYFDLGNNS  840
EENVRSLGEL TNLRDLHLTC STATSSEQAK KNLIVLVSCT GKLRNLKSII FCPGVSSMDI  900
LFDCSSRMCP LPVSVWRLEL LPPIFIFTRL SNWIGQLREL RTLKVVVREL VTNDIDSLAV  960
LPHLTVLSLH IIKAPIGRVI FKREEFPLLK KLKFICGVLC LTFQAGAMPS LHRLKIGFNA  1020
HKGERYDNIL VGSEHLLNLE FVTGQIGRAP EAQESDRTAA EAAFREANSK HPGFNGYLNM  1080
DIESMDWFKE EYWHPEIKES TNKKYWDSQK QYSDKNKQEY KGSTKNDAGR GLWTTEEDEK  1140
LAQYIQKNGH GSWRTLPKLA GLNRSSKSCR LRWTNYLRPD ILRSDTFSQK QEQTIIRLHS  1200
LLGNKWSAIA SQPAGEDGVR DPELLEHTHQ ESTHTDGLGP ITHRPRTDFL ARQPLLIGGA  1260
IVPFQLSAGA LVQGAGGADV AIKESNEMPY QQYLFHNQQP LMSGATTIST AFGSSAARTT  1320
QTQIFTPPPE SVSTTAMAGP HIWEELDDLS TLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C3e-3920287862711Disease resistance RPP13-like protein 4
6j5t_F3e-3920287862711Disease resistance RPP13-like protein 4
6j5t_G3e-3920287862711Disease resistance RPP13-like protein 4
6j5t_L3e-3920287862711Disease resistance RPP13-like protein 4
6j5t_O3e-3920287862711Disease resistance RPP13-like protein 4
6j5u_A3e-3920287862711Disease resistance RPP13-like protein 4
6j5v_A3e-3920287862711Disease resistance RPP13-like protein 4
6j5w_A3e-3920287862711Disease resistance RPP13-like protein 4
6j6i_C3e-3920287862711Disease resistance RPP13-like protein 4
6j6i_F3e-3920287862711Disease resistance RPP13-like protein 4
6j6i_G3e-3920287862711Disease resistance RPP13-like protein 4
6j6i_L3e-3920287862711Disease resistance RPP13-like protein 4
6j6i_O3e-3920287862711Disease resistance RPP13-like protein 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. At the opposite of cultivars Aichi asahi and Sasanishiki, the cultivars Nipponbare, Mokoto and Hitomebore don't recognize the effector avirulence protein AVR-Pia from M.oryzae. {ECO:0000269|PubMed:21251109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617810.10.0disease resistance protein RGA5-like
SwissprotQ2R8L10.0RGA5S_ORYSJ; Disease resistance protein RGA5
TrEMBLA0A0E0Q1820.0A0A0E0Q182_ORYRU; Uncharacterized protein
STRINGORUFI06G25490.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP543566
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-40myb domain protein 9
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Okuyama Y, et al.
    A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR protein genes.
    Plant J., 2011. 66(3): p. 467-79
    [PMID:21251109]