PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G29160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SRS
Protein Properties Length: 243aa    MW: 23266.1 Da    PI: 6.2374
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G29160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70290.63.4e-287317058154
           DUF702  58 aasskaaasaaeaaskrkrelkskkqs.alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150
                      aa+++aaa+aa+aaskr+rel  +     +++t ++ +++++     ++P+e+s+eavfrcvr+++vd++++elaYqtavsigGh+fkGiL+d+
  ORUFI06G29160.1  73 AANNSAAAAAAAAASKRPRELVRTLGRlPSANTAMVATTTSSGEGDGRFPPELSVEAVFRCVRIGAVDEADAELAYQTAVSIGGHTFKGILRDH 166
                      556667777799999****99444333033344445555555667788********************************************** PP

           DUF702 151 Glee 154
                      G+++
  ORUFI06G29160.1 167 GPAD 170
                      *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.9E-2476169IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.3E-20120168IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAGFSLRGGG GGGGGGGGVG GGGGGGRGGE RGGGGDHAIG ADSLFLYARG AAAAAADTAG  60
SGGGGXALFR GAAANNSAAA AAAAAASKRP RELVRTLGRL PSANTAMVAT TTSSGEGDGR  120
FPPELSVEAV FRCVRIGAVD EADAELAYQT AVSIGGHTFK GILRDHGPAD EAAGQLPPSS  180
AEYHQLTGQG REESSPAGSS EGVGGGHGAA TAATSAAVLM DPYPTPIGAF AAGTQFFPHN  240
PRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1626RGGGGGGGGGGGVGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043290.0AP004329.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1663_H12.
GenBankAP0054630.0AP005463.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0712G01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642175.12e-99protein SHI RELATED SEQUENCE 1
RefseqXP_025881792.12e-99protein SHI RELATED SEQUENCE 1
TrEMBLA0A0E0Q2K71e-162A0A0E0Q2K7_ORYRU; Uncharacterized protein
STRINGORUFI06G29160.11e-163(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-21Lateral root primordium (LRP) protein-related