PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G12330.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 154aa    MW: 17823.3 Da    PI: 10.3994
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G12330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.8e-093275348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++T+ Ed+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  ORUFI07G12330.1 32 PFTAREDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 75
                     89****************99.********9.***********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.72E-121776IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-102074IPR009057Homeodomain-like
PROSITE profilePS512949.7482579IPR017930Myb domain
SMARTSM007171.7E-42977IPR001005SANT/Myb domain
PfamPF002495.3E-73274IPR001005SANT/Myb domain
CDDcd001672.41E-53274No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDQEVIMATP PLTPPPRARW RHHLARDVYH RPFTAREDDE LLRLHYRLGD RWKEIGRAVY  60
GRTSRVMKHR WRELRRGGFP AAATRKEQAP AMDADDMVES EMEESDQSLP PLSTLSRTLL  120
PRASVLAALP TTTQWIPWPA ASRLGSRAWQ FDVT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052000.0AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.16e-49transcription factor MYB73
TrEMBLA0A0E0Q7E31e-106A0A0E0Q7E3_ORYRU; Uncharacterized protein
TrEMBLA3BJ531e-106A3BJ53_ORYSJ; Uncharacterized protein
STRINGORUFI07G12330.11e-107(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-10myb domain protein 70