PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G12350.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1282aa    MW: 144522 Da    PI: 8.5009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G12350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.5e-159801024348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48  
                       +WT+eEd +l ++ k+ G ++W+++ar m+ +R++ +c++rw+ +l
  ORUFI07G12350.1  980 AWTPEEDARLQRLAKENGFRRWSRVARSMP-RRSARSCRDRWRHHL 1024
                       7*****************************.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.05E-33576792IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004871.6E-15590800IPR014001Helicase superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.40.50.3008.4E-16591781IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5119213.54608787IPR014001Helicase superfamily 1/2, ATP-binding domain
PfamPF001763.1E-19615857IPR000330SNF2-related, N-terminal domain
CDDcd000468.59E-6616769No hitNo description
PROSITE profilePS5129418.0849731028IPR017930Myb domain
SMARTSM007175.5E-139771026IPR001005SANT/Myb domain
SuperFamilySSF466893.71E-229791071IPR009057Homeodomain-like
PfamPF002491.5E-139801023IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-189801033IPR009057Homeodomain-like
CDDcd001671.07E-129801024No hitNo description
PROSITE profilePS500907.36410251075IPR017877Myb-like domain
SMARTSM007170.001610291077IPR001005SANT/Myb domain
CDDcd001670.0023710321074No hitNo description
Gene3DG3DSA:1.10.10.601.1E-710341074IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1282 aa     Download sequence    Send to blast
MVLLSTDKCG GRGGWRDSHD GCCMAAWRPR HGTGDWATAT RITARVLPLA RWPRRAQWLR  60
LQLSQRHSAG RRLGASMAGG DHISVRRQRG SQRPHHGLDG AAGGVAAGAR LYGQDAAWPT  120
GGVSSNGSGR HRLPGLRFLF FRWFLLFPFL FFFPSTFPIM EWRRRSRATT LSSGGGRRQC  180
NCARLTRPRQ RKASSEVNAN VFVPGGQNGI SFPASNRAHD WGYGGVREEW EASYARKLQL  240
INFLSSLHQR TANSLITTRM DANMDTPLEQ KQKDSSAIIV LDSDDEDEAE RCEQLASENN  300
KQQAPSGPTS PCTTWIVSSA KDQVNGTLHV DGVQSTQIVP YGQNAPLINQ SPLQTSWQPS  360
IQYERVILQR RPEEQRVQDL VAASHAEKIA ETQVFLTLPT LPNERKRRKS EPTTLVDGDG  420
GTNLGKGKRK NHQNQAAVDS ILDLQQTVVP LQQNDVPSQS YRTMIEEEKP VKESDGLEDL  480
WKDFSLAAEC TKLDTNEDMS NEKDVDDENE MDDDCNHDIR IHEDLGHVCR ICGMIVRKAE  540
TIIDYQWKKA SRTRTNYYES RSKDADDIDT GAVKVSEDFI VSDIAIHPRH AKQMRPHQLE  600
GFSFLVKNLV GDKPGGCILA HAPGSGKTFM LISFIQSFLA KYPSARPLVV LPKGILGTWK  660
REFQRWQVED IPLYDFYSVK ADKRVEQLEV LKSWEAQMSI LFLGYKQFSR IICGDGDGNI  720
AAACRDRLLM VPNLLILDEG HTPRNRETDV LASLKRVQTP RKVVLSGTLF QNHVSEVFNI  780
LDLVRPKFLK MESSRPIARR IMSQVAISGI RSLKGVHDSA FTESVEDTLL NDDNFTRKSH  840
VIRSLRELTK DVLHYYKGNK LYVAAVYHVH NAMLIFLDDH CCEGVAVAPS SAGVPFMLGF  900
FVNLRHFPTC FEPLSDFCVH LLHPRPEGDD KDRGKTTQGR LGAYEVELFV PMDQEVIMAT  960
PPLPPPPRAR CVVRLKLPPA WTPEEDARLQ RLAKENGFRR WSRVARSMPR RSARSCRDRW  1020
RHHLARDVYH RPFTARDDDE LLRLHYRLGD RWKEIGRAVY GRTSRIMKHR WRELRRSGFP  1080
LAATARKVQA LDMVESEVEE SDQSLPPPEL QRSLADALAS SFGYCSLANE HAMDPLAGSL  1140
SLGTRTNYYE SRSKDADDID TGAVKVSEDF IVSDIAIHPR HAKQMRPHQL EGFSFLGDIL  1200
DELPGLVDFS VFLKLSTKQK EIVHKIEAYE KFKRSAVGTA LYIHPCLSEI SEGDAADRAT  1260
NLTDATVDSL IESIIIKDGV KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-1798110767102MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-16981107661156MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-16981107661156MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-1798110767102C-Myb DNA-Binding Domain
1msf_C2e-1798110767102C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414080.0AK241408.1 Oryza sativa Japonica Group cDNA, clone: J065159I10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647718.10.0protein CHROMATIN REMODELING 35 isoform X1
TrEMBLA0A0E0Q7E50.0A0A0E0Q7E5_ORYRU; Uncharacterized protein
STRINGORUFI07G12350.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-16myb domain protein 70