PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G14090.4
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 293aa    MW: 31436 Da    PI: 8.8541
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G14090.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD133.47.7e-11261285125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      C+gC +lL+YP+GA+s++Ca+C tV
  ORUFI07G14090.4 261 CSGCCNLLMYPAGATSICCAVCGTV 285
                      ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.5E-10258288IPR005735Zinc finger, LSD1-type
PfamPF069434.8E-8261285IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEVWC  60
CVPPHPLPHA ATRLESLRSR TGVIVDRAIL AEDKKHGGFK RLVITIGTPR SESPWLKKPM  120
HGVSGSTAMA STPWSSMPPS SHSLAFTGFF RTEIFLAFSS ASLESFCRER KGDFSCLTVA  180
GICEASTSDA IGSGSWHSNA GSPCPISNSC AIYSSQWYGF QLGTARTQLL FKFFFPDVGW  240
SPRNVGTCHS VRPGAQSQLV CSGCCNLLMY PAGATSICCA VCGTVTAVPA PEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-152CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0Q8180.0A0A0E0Q818_ORYRU; Uncharacterized protein
STRINGORUFI07G14090.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.12e-13lsd one like 1