PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G21310.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 602aa    MW: 64709.3 Da    PI: 5.7639
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G21310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.62.1e-961936012374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfs 94 
                       +lLlecA+ v+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ +++++ s +++  + l f+e+sP+  f+
  ORUFI07G21310.1 193 SQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSSFG 285
                      589************************************************************99888744.44444444446*********** PP

             GRAS  95 hltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgv 174
                      h++aN aIle++ +         +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gv
  ORUFI07G21310.1 286 HVAANGAILESFLEVaaaassetQRFHILDLSNTFCTQWPTLLEALATRSaDETPHLSITTVVSAAPSaptaaVQRVMREIGQRMEKFARLMGV 379
                      **********8754434455567999************************8889**********988889999999****************** PP

             GRAS 175 pfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse............ 251
                      pf+f++++++ +l++l+l++L++++     alaVn+v +l  ++  ++  + +rd++   +++l P+vv+vve+ead+   +            
  ORUFI07G21310.1 380 PFRFRAVHHSgDLAELDLDALDLREggaTTALAVNCVNSLRGVV--PGRAR-RRDAFAASLRRLDPRVVTVVEEEADLvA-Sdpdassateegg 469
                      *******8888**************888889************9..55555.59***********************954.44899******** PP

             GRAS 252 ....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                           Fl+ f e l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et+++W +r+++aGF+pv++se++a+++++ll
  ORUFI07G21310.1 470 dteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLL 562
                      *****************************************.**************************************************** PP

             GRAS 342 rkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
                      r++  +g+++ e         + ++l Wk++pLv++SaWr
  ORUFI07G21310.1 563 RRYR-EGWSMREAgtddsaaGAGVFLAWKEQPLVWASAWR 601
                      ****.88888866666666455566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.633166575IPR005202Transcription factor GRAS
PfamPF035147.2E-94193601IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDTLFRLVSL QAASEQQQQQ QQSASYNSRS TTSSGSRSSS HQTNASYSYY HHSSNSGGGG  60
GGGGGYYYGG QQPPPSQYYY LEPYQEECGN APHHQLYMDE DFSSSSSSRH FHHGARVQQQ  120
QPPASSTPTG TAPTPPLSTS STAAGAGHGL FEAADLSFPP DLNLDFSSPA SSSGGGTASS  180
GAVGGGGGGR WASQLLLECA RSVAARDSQR VQQLMWMLNE LASPYGDVEQ KLASYFLQGL  240
FARLTASGPR TLRTLAAASD RNTSFDSTRR TALRFQELSP WSSFGHVAAN GAILESFLEV  300
AAAASSETQR FHILDLSNTF CTQWPTLLEA LATRSADETP HLSITTVVSA APSAPTAAVQ  360
RVMREIGQRM EKFARLMGVP FRFRAVHHSG DLAELDLDAL DLREGGATTA LAVNCVNSLR  420
GVVPGRARRR DAFAASLRRL DPRVVTVVEE EADLVASDPD ASSATEEGGD TEAAFLKVFG  480
EGLRFFSAYM DSLEESFPKT SNERLALERG AGRAIVDLVS CPASESMERR ETAASWARRM  540
RSAGFSPVAF SEDVADDVRS LLRRYREGWS MREAGTDDSA AGAGVFLAWK EQPLVWASAW  600
RP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-16018760228420Protein SHORT-ROOT
5b3h_E1e-16018760228420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0054370.0AP005437.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1113_E01.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645491.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A0E0QAI80.0A0A0E0QAI8_ORYRU; Uncharacterized protein
STRINGORUFI07G21310.10.0(Oryza rufipogon)
STRINGOS07T0586900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-144GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]