PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G23200.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 102aa    MW: 10730.2 Da    PI: 6.4978
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G23200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.9e-1565101135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk+++
  ORUFI07G23200.1  65 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKEKE 101
                      6668877777************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.85E-1061100No hitNo description
SMARTSM004019.1E-461102IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-1264100IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.3E-1365101IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MRVWLGRVGG GDAMMHMLVA PDGGGGGEMP PPYGGAAAAP PPPMEQELEL HRDNADDGLD  60
GHVRCLRCGI SGNATPHMRR GPDGPRTLCN ACGIAYRKEK EP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0663171e-164AK066317.1 Oryza sativa Japonica Group cDNA clone:J013064I12, full insert sequence.
GenBankAK0738031e-164AK073803.1 Oryza sativa Japonica Group cDNA clone:J033068D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647351.17e-64protein FAR1-RELATED SEQUENCE 5 isoform X1
RefseqXP_015647352.15e-64protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A0E0QB881e-66A0A0E0QB88_ORYRU; Uncharacterized protein
TrEMBLB7EMP82e-62B7EMP8_ORYSJ; Os07g0615900 protein
TrEMBLQ0D4N71e-62Q0D4N7_ORYSJ; Os07g0615900 protein
STRINGORUFI07G23200.12e-67(Oryza rufipogon)
STRINGOS07T0615900-013e-63(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.31e-12GATA-type zinc finger protein with TIFY domain