PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G23760.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1032aa    MW: 115058 Da    PI: 5.7325
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G23760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.42.1e-56211372118
             CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                      l+ ++rwl+++ei++iL n++k++++ e+++rp sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fq
  ORUFI07G23760.1  21 LEAQNRWLRPTEICHILSNYKKFSIAPEPPNRPASGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQ 114
                      5679****************************************************************************************** PP

             CG-1  96 rrcywlLeeelekivlvhylevk 118
                      rr+ywlLee + +ivlvhylevk
  ORUFI07G23760.1 115 RRTYWLLEEGFMNIVLVHYLEVK 137
                      ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.9116142IPR005559CG-1 DNA-binding domain
SMARTSM010762.5E-7619137IPR005559CG-1 DNA-binding domain
PfamPF038593.4E-5022136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.6E-5436523IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.71E-16437523IPR014756Immunoglobulin E-set
PfamPF018331.5E-4437510IPR002909IPT domain
SuperFamilySSF484031.71E-16624730IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-17629731IPR020683Ankyrin repeat-containing domain
CDDcd002047.14E-13630728No hitNo description
PROSITE profilePS5029717.263636730IPR020683Ankyrin repeat-containing domain
PfamPF127964.4E-7642731IPR020683Ankyrin repeat-containing domain
SMARTSM002480.055669698IPR002110Ankyrin repeat
PROSITE profilePS500889.618669701IPR002110Ankyrin repeat
SMARTSM00248670708737IPR002110Ankyrin repeat
SMARTSM000154.2842864IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718843872IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.12E-7844893IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.0056844863IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0096865887IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.633866890IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4868887IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
MAEVRKYGLP NQPPDIPQIL LEAQNRWLRP TEICHILSNY KKFSIAPEPP NRPASGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEVKGGK QSFSRSKEAE ESAGLSNADS PACSNSFASQ SQVASQSMDA  180
ESPISGQISE YEDAETDNCR ASSRYHPFVE MQQPVDGVMM NNMLGVSAPR YHGEMQTTTA  240
NSDNHFATHY DIAGVFNEAG AGLRGVSKTL HDSVRFAEPY PECSAEFMEP ALYSSNATME  300
SNNLDDNSRL ETFMSEALYT NNLTQKEADA LSAAGIMSSQ AENNSYTDGI RYPLLKQSSL  360
DLFKIEPDGL KKFDSFSRWM SSELPEVADL DIKSSSDAFW SSTETVNVAD GTSIPINEQL  420
DAFAVSPSLS QDQLFSIIDV SPSYACTGSR NKVLITGTFL ANKEHVENCK WSCMFGDVEV  480
PAEVLAHGSL RCYTPVHLSG RVPFYVTCSN RVACSEVREF EFRDSDARQM DTSDPQTTGI  540
NEMHLHIRLE KLLSLGPDDY EKYVMSDGKE KSEIINTISS LMLDDKCLNQ AVPLDEKEVS  600
TARDQNIEKL VKEKLYCWLV HKVHDEDKGP NVLGKEGQGV IHLVAALGYD WAVRPIITAG  660
VKVNFRDARG WTALHWAASC GRERTVGALI ANGAESGLLT DPTPQFPAGR TAADLASENG  720
HKGIAGFLAE SALTSHLSAL TLKESKDGNV KEICGLGGAE DFAESSSAQL AYRDSQAESL  780
KDSLSAVRKS TQAAARIFQA FRVESFHRKK VVEYGDDDCG LSDERTLSLV SIKNAKPGQN  840
DGSHSAAVRI QNKFRGWKGR KEFMIIRQKI VKIQAHVRGH QVRKSYRRIV WSVGIVEKII  900
LRWRRKRRGL RGFQPVKQLE GPSPIQQLEG PSQIQPAKEE EEDEYDYLKD GRKQAEGRLQ  960
RALARVKSMT QYPEAREQYS RIANRVTELQ EPQAMMIQDD MQSDGAIADG GDFMAELEEL  1020
CGDGDAPMPT IL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00501DAPTransfer from AT5G09410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084610.0AK108461.1 Oryza sativa Japonica Group cDNA clone:002-143-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647012.10.0calmodulin-binding transcription activator 1 isoform X1
TrEMBLA0A0E0QBG10.0A0A0E0QBG1_ORYRU; Uncharacterized protein
STRINGORUFI07G23760.20.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.10.0ethylene induced calmodulin binding protein