PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI07G24680.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 324aa    MW: 35545.4 Da    PI: 9.4426
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI07G24680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573107.87.8e-3427126297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++ +sksqlveK+rrLK+K++++v++ + sg+ +sf+++h+q ife+
  ORUFI07G24680.1  27 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRGRLQLGFSKSQLVEKLRRLKRKYRNCVSRlRGSGSAFSFRSPHEQAIFEI 120
                      79************************99877778***************************************8889***************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  ORUFI07G24680.1 121 ARNIWR 126
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3028125IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MATPAAAGGG SVGGVGSSSG GGERRPLFQR LWTEEDEIVI LRGFAEFTAA RGTAFASHQY  60
DTDPFYEDMR GRLQLGFSKS QLVEKLRRLK RKYRNCVSRL RGSGSAFSFR SPHEQAIFEI  120
ARNIWRPTNK HGRDGDSDDE DATQVTPAPV PVNTSPNGEV KSPTSGRQRR RRRGGDFAAT  180
APAAAPATTN MVQPIQPVQV PVSVPVKMDD TLPALSQTTM PITVTMEGSE PLRLPVMPPQ  240
PAVLDADKSC LTPLFKEMVR AVINIESNPF GAQLSEPPHG LPMEGEKWRK QRILELEVYL  300
KRIELLQDQV KAMLEELKSS APGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037490.0AP003749.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1136_D11.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645065.10.0probable transcription factor At5g28040
TrEMBLA0A0E0QBR40.0A0A0E0QBR4_ORYRU; Uncharacterized protein
STRINGORUFI07G24680.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-35DNA-binding storekeeper protein-related transcriptional regulator