PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G02510.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 797aa    MW: 85460.1 Da    PI: 6.4511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G02510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.5e-21125180156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  ORUFI08G02510.1 125 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 180
                      688999***********************************************999 PP
2START200.95.5e-633015271206
                      HHHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ela +a++elv++a+++ep+W      e + ++e+ ++f+++ +      ++ea+r+++vv+m+++ lve l+d++ qW+  +     +a+tle
  ORUFI08G02510.1 301 ELAVAAMEELVRMAQLGEPLWAPALggEALGEEEYARTFPRGLGpkspeLRSEASRETAVVIMNHVSLVEMLMDVG-QWTALFSsivsRAATLE 393
                      57899********************99999*********998889*******************************.99999999999****** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EE.SSEEEEEEEECTCEEEEEE CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRael.lpSgiliepksnghskvtw 166
                      v+s+g      galqlm+ae+q++splvp R+  f+Ry++q+++g+w++vdvS+d  +       ++  +R+++ +pSg+li++++ng+skvtw
  ORUFI08G02510.1 394 VLSTGvagnhnGALQLMSAEFQMPSPLVPtRETQFLRYCKQHPDGTWAVVDVSLDGLRAGAGggcQPAAARGHRrRPSGCLIQEMPNGYSKVTW 487
                      ************************************************************9999********8537****************** PP

                      EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      vehv+ +++++h+l++++v+sg+a+ga++wvatl+rqce+
  ORUFI08G02510.1 488 VEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCER 527
                      **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-23111180IPR009057Homeodomain-like
SuperFamilySSF466892.55E-20112182IPR009057Homeodomain-like
PROSITE profilePS5007117.394122182IPR001356Homeobox domain
SMARTSM003891.1E-20123186IPR001356Homeobox domain
CDDcd000867.65E-20124183No hitNo description
PfamPF000462.4E-18125180IPR001356Homeobox domain
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PROSITE profilePS5084843.25292530IPR002913START domain
SuperFamilySSF559615.5E-34293529No hitNo description
CDDcd088756.36E-120296526No hitNo description
SMARTSM002347.2E-60301527IPR002913START domain
PfamPF018521.1E-52302527IPR002913START domain
Gene3DG3DSA:3.30.530.203.9E-5367526IPR023393START-like domain
SuperFamilySSF559615.5E-26547770No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MMIPGRNMSP AMIGRPNGGG GGGGVAYASS SSALSLGQSL LDGHHHQLPS LLQQHHNGHH  60
LLDQHQQHQH QLPPQATTTS ESDGRAPRDE LEMSKSGGSD NLESGGGGGG GGSGDDQDPN  120
QRPRKKRYHR HTQHQIQELE AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK  180
TQHERHENNA LRAENEKLRA ENMRYKEALA NASCPNCGGP AAIGEMSFDE HHLRLENARL  240
RDEIDRISAI AAKYVGKPAA AVSAAYPPLP PSNRSPLDHM GIPGAGADVF GADFDKPLVI  300
ELAVAAMEEL VRMAQLGEPL WAPALGGEAL GEEEYARTFP RGLGPKSPEL RSEASRETAV  360
VIMNHVSLVE MLMDVGQWTA LFSSIVSRAA TLEVLSTGVA GNHNGALQLM SAEFQMPSPL  420
VPTRETQFLR YCKQHPDGTW AVVDVSLDGL RAGAGGGCQP AAARGHRRRP SGCLIQEMPN  480
GYSKVTWVEH VEADDQMVHN LYKPVVNSGM AFGARRWVAT LERQCERLAS AMASNVASSG  540
DAGVITTSEG RRSMLKLAER MVASFCGGVT ASTTHQWTTL SGSGAEDVRV MTRKSVDDPG  600
RPPGIILNAA TSFWLPVPPS RVFDFLRDDS TRSEWDILSN GGVVQEMAHI ANGRDHGNAV  660
SLLRVNNANS NQSNMLILQE CCTDATGSYV IYAPVDVVAM NVVLNGGDPD YVALLPSGFA  720
ILPDGPDGGG GSLLTVAFQI LVDSVPTAKL SLGSVATVNS LIACTVERIK AAITGDNGVA  780
PPCPRGSREG SRANSEV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185630.0AK318563.1 Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648539.10.0homeobox-leucine zipper protein ROC7
SwissprotA2YR020.0ROC7_ORYSI; Homeobox-leucine zipper protein ROC7
TrEMBLA0A0E0QE320.0A0A0E0QE32_ORYRU; Uncharacterized protein
STRINGORUFI08G02510.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2