PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G03370.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 341aa    MW: 36210.1 Da    PI: 10.289
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G03370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.2e-14109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I++ + ++Rt+ q+ s+ qky
  ORUFI08G03370.1 109 PWTEEEHRTFLAGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKY 153
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.431102158IPR017930Myb domain
SuperFamilySSF466891.08E-17103158IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-18105157IPR006447Myb domain, plants
SMARTSM007173.5E-11106156IPR001005SANT/Myb domain
CDDcd001677.70E-10109154No hitNo description
PfamPF002494.9E-12109153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-12109152IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MPQDSRPAAM RLFGVTISPP PPPPEPEPEP EPDPSDPRDP SPRPAREDAM RKCKSMGNLA  60
AAAAASSAAA GGGGAGDAGG SGDGYLSDGG LLLSSGKRRR AQERKKAVPW TEEEHRTFLA  120
GLEKLGKGDW RGISKNFVTT RTPTQVASHA QKYFLRQTNP NKKKRRSSLF DMMATDMSPA  180
PNCPVLPPSM GKLHDMVAMT KQLQNSSLEG VSSSSTVNLA PQVARDLPPP IPSFKATNVD  240
SSLSKMNHMD GFLRAPMLFR PIPRIAEGAS SSTPATASIA DLEFQANLTA CSNALFASPR  300
RKPKKADPPA EKDLDLTVAP PSQQTRASIS SQNAVGVIQV V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2420170.0AK242017.1 Oryza sativa Japonica Group cDNA, clone: J075110L24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648291.10.0transcription factor MYBS3-like isoform X1
TrEMBLA0A0E0QED80.0A0A0E0QED8_ORYRU; Uncharacterized protein
STRINGORUFI08G03370.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-37MYB_related family protein