PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G04020.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 336aa    MW: 34812.5 Da    PI: 8.6013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G04020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.9e-105782127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +kt+lC+ f++ GtC+y  +C+FaHg+
  ORUFI08G04020.1 57 FKTKLCCKFRA-GTCPYVTNCNFAHGM 82
                     69*********.*************95 PP
2zf-CCCH18.14.8e-06139164126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd C+F H+
  ORUFI08G04020.1 139 YKGRHCKKFYTDEGCPYGDACTFLHD 164
                      77888********************7 PP
3zf-CCCH43.55.2e-14215240126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  ORUFI08G04020.1 215 WKTRICNKWEMTGYCPFGSKCHFAHG 240
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.4E-85487IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-145489IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0285683IPR000571Zinc finger, CCCH-type
SMARTSM003560.00145682IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-75782IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629138166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7138166IPR000571Zinc finger, CCCH-type
SMARTSM003560.43138165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-17209244IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-10210245IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9214241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422214242IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-11215240IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGHRGPYTSQ WNADGGGGGS SRAGSEQPPP GKKSRGGGGG EGGGNTSKSR AIGKMFFKTK  60
LCCKFRAGTC PYVTNCNFAH GMEELRKPPP NWQEIVAAHE EATEAREEHQ IPIMTSSGPT  120
AGGDAGCGGG GGGGSGRAYK GRHCKKFYTD EGCPYGDACT FLHDEQSKAR ESVAISLSPS  180
VGGGGGGGSY NSAAAAAASA SAAAGNGPMQ KPSNWKTRIC NKWEMTGYCP FGSKCHFAHG  240
AAELHKYGGG LVDIDSRDAA ATPDSKQAVV SAKAPAETAA ASTTVLPHAD VYHLGVQAQR  300
STIAGQRSGQ VQRPIQKWKG PDKISRIYGD WIDETE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046350.0AP004635.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0672D01.
GenBankAP0046980.0AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648128.10.0zinc finger CCCH domain-containing protein 56
RefseqXP_015648129.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0E0QEM20.0A0A0E0QEM2_ORYRU; Uncharacterized protein
STRINGORUFI08G04020.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-88C3H family protein