PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G11050.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 349aa    MW: 39028.7 Da    PI: 6.5302
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G11050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.26.8e-16229270142
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                      k+i n   r v fskRr+ ++KKA+ELS+LC+++vav ++s+
  ORUFI08G11050.1 229 KPIANRKARDVCFSKRRQVVIKKANELSILCGVNVAVAVLSP 270
                      6899***********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-14221282IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.811221269IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.93E-17221271IPR002100Transcription factor, MADS-box
CDDcd001201.21E-19222270No hitNo description
PRINTSPR004043.2E-10223243IPR002100Transcription factor, MADS-box
PfamPF003192.4E-16231271IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-10243258IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-10258279IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MYSSETGAWS TPVVLDDGLD SWEQRWRDAQ SRGEFYRVPY VMPRRVALVG DEIYFTLRED  60
NAIIKYNWGM HCLSEIDSLS PDVYGIALME MENGSLGFAC IEDSSLYVWS RKVNSEGAAE  120
WVQCRVIKLD KMIPVANLSD EAFVVGSGEG MGAIFVSTGV GLFTIELKSR RVKKVAEPEV  180
YFSILPYMSF YTPALQEWAN YRNKHQHADE AMKAQVIVKA MRRGKVKIKP IANRKARDVC  240
FSKRRQVVIK KANELSILCG VNVAVAVLSP AVEKKKNQRG QDVRLASDVN ALGLHELEAF  300
DSNLNVIDDI VDSNDVVKNA KQTAEPQTQM SVASTLQFML DGQSIAPSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071120.0AK107112.1 Oryza sativa Japonica Group cDNA clone:002-123-A07, full insert sequence.
GenBankAP0044580.0AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08.
GenBankAP0058190.0AP005819.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0063H21.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3603940.0AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645420.14e-96uncharacterized protein LOC4343043
TrEMBLA0A0E0QH260.0A0A0E0QH26_ORYRU; Uncharacterized protein
STRINGORUFI08G11050.30.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.21e-10AGAMOUS-like 31