PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G11110.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 138aa    MW: 14259.1 Da    PI: 11.3466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G11110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.8e-052446123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC+ Cg+sFs+   L  H  +H
  ORUFI08G11110.1 24 FKCSVCGRSFSSYQALGGHKTSH 46
                     89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-62350No hitNo description
PfamPF139121.6E-122447IPR007087Zinc finger, C2H2
SMARTSM003550.00812446IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.782451IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-42446IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MLALGGHHRV QAPPPLSAPV GAEFKCSVCG RSFSSYQALG GHKTSHRFKL PTPPASPVLA  60
PASSEVQSPL AFSPPRGGHH RVQAPPPLSA LVRPSAGAWR PQDEPPGQAA DSARSSGNGH  120
SAARAFDLNL PAGAIRDR
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044581e-121AP004458.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0045D08.
GenBankAP0149641e-121AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3603931e-121AY360393.2 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16, complete sequence.
GenBankAY3603941e-121AY360394.1 Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0070J19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649250.15e-42zinc finger protein 1, partial
SwissprotQ424302e-22ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0QH362e-91A0A0E0QH36_ORYRU; Uncharacterized protein
STRINGORUFI08G11110.13e-92(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-10zinc-finger protein 1