PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G17540.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 299aa    MW: 31717.8 Da    PI: 6.6304
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G17540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.74.2e-341172373124
              TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 
                       ++drhski T++g RdRR+Rls+ +a+ fF+Lqd+LGfdk+s t+eWLl+q+k+ai  lt  +s +a ++            ++++++a+++a
  ORUFI08G17540.1 117 FRTDRHSKIRTAQGVRDRRMRLSVGVARDFFALQDKLGFDKASRTVEWLLTQSKHAINRLTLPDSADAAAApaF---AAAPPPADQHSSAMAAA 207
                      689**********************************************************9955555233221...11111122222334444 PP

              TCP  95 akskksqksaasalnlakesrakararare 124
                      a s  ++k +as ++  + s+a+ar r ++
  ORUFI08G17540.1 208 AASAAKEKGEASSSSTTNASSARARNRDHD 237
                      455555555555566667777777776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-32118232IPR005333Transcription factor, TCP
PROSITE profilePS5136933.087118176IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MIPPYPNNNL HHHHHHCSSN QEPHLPLHPP AFLMSAPSSS SSPSTLDEYD ARFFFPGADA  60
YTAGHRQDEE TLEAVLRQPV TTTAAAAAAV EGGGGGGGGG AGGSPAAAAA ATRRRPFRTD  120
RHSKIRTAQG VRDRRMRLSV GVARDFFALQ DKLGFDKASR TVEWLLTQSK HAINRLTLPD  180
SADAAAAPAF AAAPPPADQH SSAMAAAAAS AAKEKGEASS SSTTNASSAR ARNRDHDGSS  240
PVAPMDERGR RGVELDWTAA AAASTEQPMD GLEYYFQYYN HLEEIMSCDP TTTTDESRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038680.0AP003868.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1111_B08.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883271.10.0transcription factor TB1
TrEMBLA0A0E0QJD50.0A0A0E0QJD5_ORYRU; Uncharacterized protein
STRINGORUFI08G17540.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40523172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-23TCP family protein