PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G19740.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 513aa    MW: 55278.9 Da    PI: 10.1763
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G19740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.82.4e-31170269298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifels 92 
                      ++ r+w+ +De+++L++li+++ak+g+   +s+d+ ++++++++++s+k+s++ql++K+rrLK+K++   ++ +ksg++p++ +ehd++++els
  ORUFI08G19740.1 170 RPPRVWNPQDEVTILRALISYRAKNGAlpGSSQDTGKLHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRvTKSGRDPDLPTEHDREVYELS 263
                      578************************888999*************************************99899******************* PP

           DUF573  93 kkiWgs 98 
                      kk+Wg+
  ORUFI08G19740.1 264 KKVWGT 269
                      ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-27172268IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAPKRPAAAS GSASEARGGA PPSPSRSRSK TPPHNAAVLS STPASAAVDF VAASDSDAGA  60
DADARLASPR RSRERSPRLH SDSDNSAAAT AEAAEAAAAA AFDDGDDEGN ATPPPRSRRS  120
SRVEATGVKP ISSRPMDASR RPAAASSQSQ RRSKRPRSSP TQHSPEQHKR PPRVWNPQDE  180
VTILRALISY RAKNGALPGS SQDTGKLHNM IRGQLSVKAS TTQLSDKVRR LKHKYNLILT  240
RVTKSGRDPD LPTEHDREVY ELSKKVWGTK SGGAGAGSGG GGGGGGGRVY ENAEVVQSDE  300
EQGSRDDSDE DMESGWDDRD HRNRRLKAIV VANGNGNAVT GGRSVHGNGS GKGDVADKGK  360
DMYPYLWEAV EELSKEHPSG TAFRKAFGVL DGSRARAMEE KLNRFRLSEI RQQLRRMDLM  420
KETIKMEAST VDEGDEQRDG LNLGSMPRAL GPRRRINNFQ ATWSTQHHGP NYMPHLGNFV  480
LERELISDPK SPEATPKLTG NLFCSPPSQT ESH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0045850.0AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
GenBankAP0064610.0AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648426.10.0STOREKEEPER protein
TrEMBLA0A0E0QK440.0A0A0E0QK44_ORYRU; Uncharacterized protein
STRINGORUFI08G19740.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-14DNA-binding storekeeper protein-related transcriptional regulator