PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI08G19970.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 223aa MW: 24838.5 Da PI: 9.4742

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI08G19970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.7	4e-16	81	132	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ ORUFI08G19970.1 81 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQEEIMEMQ 132 79********************************************999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-14	77	141	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.208	79	130	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.94E-11	81	131	No hit	No description
Pfam	PF00170	1.7E-14	81	133	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.71E-25	81	133	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.0E-15	81	130	No hit	No description
PROSITE pattern	PS00036	0	84	99	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MGFSPVGIGD PTMGNRLMSG VAGIGGGAIT VAPVDTSVGQ MDSAGKGDGD LSSPMAPVPY 60 PFEGVIRGRR SGGNVEKVVE RRQRRMIKNR ESAARSRARK QAYTMELEAE VQKLKEQNME 120 LQKKQEEIME MQKNFFPEMQ KNQVLEAVNN PYGQKKRCLR RTLTEGCIMS EEFMPKMINM 180 GSHLTRKNKP DQSDTTVEFH PRPDVLLQGA GEGMLEKSIS DWM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB023288	0.0	AB023288.1 Oryza sativa Japonica Group mRNA for TRAB1, complete cds.
GenBank	AY323482	0.0	AY323482.1 Oryza sativa (japonica cultivar-group) bZIP transcription factor (aba1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650926.1	1e-114	bZIP transcription factor TRAB1
Swissprot	Q6ZDF3	1e-115	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A0E0QK70	1e-163	A0A0E0QK70_ORYRU; Uncharacterized protein
STRING	ORUFI08G19970.1	1e-164	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.3	3e-38	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]