PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI08G24230.1
Common NameNAC4
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 232aa    MW: 24699.2 Da    PI: 10.4104
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI08G24230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.12.6e-30191551128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdkev 92 
                      lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ + yfF+ r  + a+g+r++ +++ g Wk a g+dk+v
  ORUFI08G24230.1  19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPAA-ARGRRQQVTASGGCWKpAGGRDKPV 108
                      79****************************.8899998***********43..456789****99886.578999999999****66678***9 PP

              NAM  93 lsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                      +++   +++lvg+kk +vf          + a  +    Wvmhey+l
  ORUFI08G24230.1 109 VVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155
                      9988988999**********8854433222333333667******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-4014179IPR003441NAC domain
PROSITE profilePS5100540.55419179IPR003441NAC domain
PfamPF023655.0E-2020155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL  60
DPWDIPGASS DGDKYFFAVR PAAARGRRQQ VTASGGCWKP AGGRDKPVVV ARCGGSHLVG  120
VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLARPMH KKGCLAEAEE WVVCRIFQRS  180
SSGSRSPRRP DNDVRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-291918517171NO APICAL MERISTEM PROTEIN
1ut4_B1e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_A1e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_B1e-291918517171NO APICAL MERISTEM PROTEIN
3swm_A1e-291918520174NAC domain-containing protein 19
3swm_B1e-291918520174NAC domain-containing protein 19
3swm_C1e-291918520174NAC domain-containing protein 19
3swm_D1e-291918520174NAC domain-containing protein 19
3swp_A1e-291918520174NAC domain-containing protein 19
3swp_B1e-291918520174NAC domain-containing protein 19
3swp_C1e-291918520174NAC domain-containing protein 19
3swp_D1e-291918520174NAC domain-containing protein 19
4dul_A1e-291918517171NAC domain-containing protein 19
4dul_B1e-291918517171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8415660.0CT841566.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104M04, full insert sequence.
GenBankKJ6902490.0KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-165NAC domain-containing protein 18
TrEMBLA0A096ZZ881e-166A0A096ZZ88_ORYRU; NAC transcription factor 4
STRINGORUFI08G24230.11e-167(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-31NAC domain containing protein 83