PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G00020.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 490aa    MW: 54428.4 Da    PI: 10.2344
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G00020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.88.2e-1082169397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+ +
  ORUFI09G00020.1  82 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRNV 167
                      9************************65..56789999999999865278899********9999998888......556899************ PP

           DUF573  96 Wg 97 
                      W 
  ORUFI09G00020.1 168 WV 169
                      *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-1382168IPR007592Protein of unknown function DUF573
PfamPF030176.5E-17393447IPR004264Transposase, Tnp1/En/Spm-like
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKKPLKPSQE EEEALPLPLP PPDRKRKKAS EPVNSPERAK  60
KKKTATPHEP PSAKQQKRPL PFQRTWSPND EVLILEAMAA HRQEHGKVPT AAELFPVLNG  120
RLDRKRLTYK KLADKLRTFM RRHGRDAKNG PPTQAHDRRL YDLSRNVWVS QTQPPNLSAN  180
ANSNIAGGQP NQHDAMPTAG KAFDKMRDSY PNLTQALLLL VGTDLEKALT AIDETKAQAL  240
DLKVSNLKKE LSEAVMESAT IQSTESSKIP CFPSTKLQPE FGAEIEKNFQ LEHLDEMKGT  300
QSQQMADSKQ QHDKSSAKGI ICESSESGLR SIVADNNILC NTLQKEMVVQ QKLSCGKTKE  360
VTSKHRHPQK LGELRRVTMH GQQEDTNNEG GKEVLLLSTT RPHIPVAKAT LQTSSGSKFV  420
GGVPLGSEWY QVFVNDVLKP EAPLLRPPGM KMAEALKSII AWPCAQVTGK ADFMSETKLY  480
RFAHYKGCGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11323DKKKKKKKKKP
21422KKKKKKKKK
31622KKKKKKK
44347RKRKK
54562RKKASEPVNSPERAKKKK
65662ERAKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610933.10.0uncharacterized protein LOC4346364 isoform X1
TrEMBLA0A0E0QMM10.0A0A0E0QMM1_ORYRU; Uncharacterized protein
STRINGORUFI09G00020.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-11DNA-binding storekeeper protein-related transcriptional regulator