PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G00140.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 320aa    MW: 35213.8 Da    PI: 10.3098
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G00140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57332.13.2e-10110201397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                       +r ws  De+ +L ++ + ++ +g  +  ++++++  + +s++  ++    l +K+ +LK+ + + +     ++ p+ + ++ +  f+l+ k+
  ORUFI09G00140.1 110 RKRSWSRADELRILEAMANHANAHG-GALPETSDLFAALASSLERgDADLPKLADKVHKLKRWYDNARLP---QRCPTDDDDDTRRLFQLCGKV 199
                      6899*******************99.678888888888888887538999****************9988...6777778888899******** PP

           DUF573  96 Wg 97 
                      Wg
  ORUFI09G00140.1 200 WG 201
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.8E-16111201IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSSWWSWRSL FSSLANANGG GSNADASSGS GTSSSPPVHE AQQAAARRRS ARTKKPPEEE  60
AAGSQPQPKT RPSPASKASK AKVLLLLGDG EPKKKPAPNP TPTQKRSNKR KRSWSRADEL  120
RILEAMANHA NAHGGALPET SDLFAALASS LERGDADLPK LADKVHKLKR WYDNARLPQR  180
CPTDDDDDTR RLFQLCGKVW GPPSTVLRTS PRQRHKVVGV LVQGNGANPQ PAAALKVKEK  240
RVRRELSELY VLYPCLAQEV KAHANEYGEL IGTAFQFIGD DEARCYDDRY RKMLVDKLNM  300
KKEHADVTKS LLCTLAGYIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192111KKKPAPNPTPTQKRSNKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060580.0AP006058.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16.
GenBankAP0060610.0AP006061.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0414D03.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611454.10.0uncharacterized protein LOC9269165
TrEMBLA0A0E0QMN30.0A0A0E0QMN3_ORYRU; Uncharacterized protein
TrEMBLQ69K160.0Q69K16_ORYSJ; Uncharacterized protein
STRINGORUFI09G00140.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162861010