PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G03940.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 430aa    MW: 47220.8 Da    PI: 9.1463
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G03940.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.6e-11144172533
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                      k  rr+++NReAAr+sR+RKka+i++Le 
  ORUFI09G03940.2 144 KTLRRLAQNREAARKSRLRKKAYIQQLES 172
                      6789***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.4E-6140202IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.795142184IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.0E-8142184No hitNo description
SuperFamilySSF579591.88E-7144178No hitNo description
PfamPF001706.8E-9144173IPR004827Basic-leucine zipper domain
PROSITE patternPS000360147162IPR004827Basic-leucine zipper domain
PfamPF141443.8E-27229301IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MADFDQASLF LYLDSHDQQS IQEQRQTLNI FPSQPMHVAD PAHEAKSAGV AMAMLPNGNQ  60
LQVLPSHPSK KPDQQGGQKI NSSVPTNPPG PNLPLPNSAK DNKNSSLIKG PKKCGLQKEG  120
SSSGKGATTS NDPEREGRRT LDPKTLRRLA QNREAARKSR LRKKAYIQQL ESSRIRLSQL  180
EQQVHVARVQ GAMLGAGDQH QGLPSGPSAA SLFDLEYGRW VEEHSKLIFQ LRAALNEQMA  240
DNQLQVFVNG AMAQHDELLS LKGAIARADI FHLLCGVWAT PAERCFLWLG GFRPSEAIKV  300
MLKQVEPLSE GQLMSIYELQ QAAKGTEDAL SHAMDGLQQS LSDTVAAPDV AAAGGFMGHM  360
SLAMNKISAM EDIVRQADGL RQQTLHKLQH MLTIRQAARC FVAISDYFHR LRALSTLWVA  420
RPRPEEGPAM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069880.0AK106988.1 Oryza sativa Japonica Group cDNA clone:002-120-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651202.10.0transcription factor TGAL7 isoform X1
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA0A0D3H4L00.0A0A0D3H4L0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QP170.0A0A0E0QP17_ORYRU; Uncharacterized protein
STRINGORUFI09G03940.10.0(Oryza rufipogon)
STRINGOBART09G03520.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-125bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]