PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G04820.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 322aa MW: 37227.4 Da PI: 9.2911

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G04820.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.1	5.4e-26	183	232	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl ORUFI09G04820.1 183 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 232 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.27	167	252	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-21	184	232	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MTRKAPGAVR SVHGYKVYGR GGRRRWERWV EREFVLTPAS CREVPAPVAP PRILPAEWRG 60 RPAYREGQVV AAGAWRCILA FDSAAAPPRT PPPVLSPFLN PRLMCVPSLY NDLEKVFRFQ 120 NVEKIPKLMQ CDSEEKLSSW DARDKSSDEV HASESDSDDD LQSGEEEKPT VQKQRRANKK 180 HIASITLVDI AQYFHLPIRE ASRTLKIGVS ILKRKCRQYN IPRWPHRKIK SLDSLIQDLE 240 YVIDDGDDHD DTGDDVQQEK HKQTAEEKQE AIMALTRRKQ MLETEKETIQ QIPAMDLKVE 300 TKQFREDVFK RRYRAKKDLA ND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	310	317	RRYRAKKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606628	1e-155	AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBank	AP014960	1e-155	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-155	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634161.1	0.0	protein RKD5 isoform X1
TrEMBL	A0A0E0QPB1	0.0	A0A0E0QPB1_ORYRU; Uncharacterized protein
STRING	ORUFI09G04820.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-45	RWP-RK domain-containing protein