PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G04820.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 219aa MW: 25733 Da PI: 6.2676

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G04820.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83	2.9e-26	80	129	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l d+++yF+lpi++A+++L++++++LKr+CRqy+I+RWPhRkiksl ORUFI09G04820.2 80 ASITLVDIAQYFHLPIREASRTLKIGVSILKRKCRQYNIPRWPHRKIKSL 129 78**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.27	64	149	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-21	81	129	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MCVPSLYNDL EKVFRFQNVE KIPKLMQCDS EEKLSSWDAR DKSSDEVHAS ESDSDDDLQS 60 GEEEKPTVQK QRRANKKHIA SITLVDIAQY FHLPIREASR TLKIGVSILK RKCRQYNIPR 120 WPHRKIKSLD SLIQDLEYVI DDGDDHDDTG DDVQQEKHKQ TAEEKQEAIM ALTRRKQMLE 180 TEKETIQQIP AMDLKVETKQ FREDVFKRRY RAKKDLAND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	214	RRYRAKKD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606628	1e-137	AL606628.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10, complete sequence.
GenBank	AP014960	1e-137	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-137	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634161.1	1e-159	protein RKD5 isoform X1
TrEMBL	A0A0E0QPB2	1e-159	A0A0E0QPB2_ORYRU; Uncharacterized protein
STRING	OGLUM04G21810.1	1e-158	(Oryza glumipatula)
STRING	ONIVA04G20320.1	1e-158	(Oryza nivara)
STRING	ORGLA04G0188200.1	1e-158	(Oryza glaberrima)
STRING	OBART04G21780.1	1e-158	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	4e-38	RWP-RK domain-containing protein