PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G05290.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 250aa    MW: 25676.3 Da    PI: 6.7864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G05290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-083761227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     k +lC+ +++ G C+ G  C++aHg+
  ORUFI09G05290.1 37 KSVLCMKWRE-GRCHNGVACRYAHGE 61
                     678*******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.32E-73366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-93566IPR000571Zinc finger, CCCH-type
SMARTSM003560.00113561IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2063562IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-63761IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDSAAAERPS SYAVNFPPLL PAPAPTVAGA MGVANHKSVL CMKWREGRCH NGVACRYAHG  60
EEDQRIVPEM RVGGGGTSMH ARSSPPRDGA SSGSTASIAM AACRIEEQRH GRGGSPSSYH  120
ARGGNALGSG SARSTAPTPP RAHTTPHCSR SVAAPRASTS PLRPSPVPPP ATLHSAADVQ  180
RSVARALEDF EQRESSSSVF PLAIDIVAED AMTATSEPSA TSDDDAITTT SSSSTTDADE  240
LDAAVAAPPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059120.0AP005912.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611102.11e-137putative zinc finger CCCH domain-containing protein 58
SwissprotQ69KP01e-138C3H58_ORYSJ; Putative zinc finger CCCH domain-containing protein 58
TrEMBLA0A0E0QPG11e-177A0A0E0QPG1_ORYRU; Uncharacterized protein
STRINGORUFI09G05290.11e-178(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3154444