PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G10740.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 238aa    MW: 25528.2 Da    PI: 6.1691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G10740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.17.9e-152368147
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL 47
                     lppGfrF+Ptd elv +yL++k+++  ++   +i+++d+y++ePwdL
  ORUFI09G10740.1 23 LPPGFRFRPTDGELVAHYLARKAADAGFTS-AAIRDADLYRAEPWDL 68
                     79*************************999.78*************9 PP
2NAM43.51e-137810997128
              NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                      g+ vg+kktLvfy+grap+gekt+Wvmheyrl
  ORUFI09G10740.1  78 GRPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 109
                      6789**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.7141141IPR003441NAC domain
SuperFamilySSF1019414.18E-3514141IPR003441NAC domain
PfamPF023653.5E-1524109IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAGGGGGDRA PSSSSTAMIS RLLPPGFRFR PTDGELVAHY LARKAADAGF TSAAIRDADL  60
YRAEPWDLLP PPRXGGGGRP VGVKKTLVFY RGRAPRGEKT SWVMHEYRLL HGGAAATASS  120
SPTPTTVVAR SEWVICRVFV RKTPDGNNDR GTTEHHLPSD DAHLRSSPAP ANSVDGAGHA  180
SCSFFSGANE SMAPSDHFNI GDDMILHGHD EEELLMMNCS SAFDLPELLD YESFSLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-242314315170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641910.0AK064191.1 Oryza sativa Japonica Group cDNA clone:002-104-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611185.11e-140NAC domain-containing protein 79
TrEMBLA0A0E0QRB91e-172A0A0E0QRB9_ORYRU; Uncharacterized protein
STRINGORUFI09G10740.11e-173(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.14e-29NAC domain containing protein 58