PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G11510.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 352aa    MW: 37593.6 Da    PI: 6.4262
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G11510.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-094686136
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkf 36
                     s y+GV++++++gr++A+++d  s+n    k+ k+++lg++
  ORUFI09G11510.3 46 SVYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGTY 86
                     78*******************888866656446*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.6E-64686IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-54687IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-44786IPR001471AP2/ERF domain
PROSITE profilePS5103215.8347131IPR001471AP2/ERF domain
SMARTSM003803.4E-1947137IPR001471AP2/ERF domain
PRINTSPR003674.0E-64859IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-7103133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-7104133IPR001471AP2/ERF domain
SMARTSM003800.01145186IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-5155182IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-6155181IPR001471AP2/ERF domain
PRINTSPR003674.0E-6162182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAKPRKNSTT TNTSSSGVAA AAAAAAVKPK RTRKSVPRES PSQRSSVYRG VTRHRWTGRF  60
EAHLWDKNSW NESQNKKGKQ VYLGTYVRLS GHGLGMITQP ARAYDDEEAA ARAYDLAALK  120
YWGPDTILNF PLSAYEGKAV GSQEEYRSTE ALQATQEEAA MAYDMAAIEY RGLNAVTNFD  180
LSRYIKWLRP GADGAGAPQN PHPMLGALSA QDLPAIDLDA MASSFQHDGH GAAAAAAQLI  240
PARHSLGHTP TTSALSLLLQ SPKFKEMIER TSAAETTTTS STTTSSSSPS PPQATKDDGA  300
SPQCSFPEDI QTYFGCAAED GAAGAGYADV DGLFFGDLAA YASPAFHFEL DL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2887540.0AK288754.1 Oryza sativa Japonica Group cDNA, clone: J090066A06, full insert sequence.
GenBankAP0054200.0AP005420.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0418B08.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611852.11e-172AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A0E0QRK80.0A0A0E0QRK8_ORYRU; Uncharacterized protein
STRINGORUFI09G11510.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-36ARIA-interacting double AP2 domain protein