PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G13330.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 465aa    MW: 49062.3 Da    PI: 9.5052
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G13330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.49e-33216313298
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                      +++r+ws+ De+v+L+Gli++++k+g+   +++di ++++++++++s+kvs++ql++K+rrLK+K+++  ++ak+gke +f ++hd++i++l+k
  ORUFI09G13330.1 216 RPSRVWSQADELVILRGLITYRTKRGVlpGSTQDIGKLHSYIRGQLSAKVSTTQLSDKVRRLKQKYQMLATRAKTGKE-VFPTPHDHNIYQLAK 308
                      678************************888899***************************************999999.9************** PP

           DUF573  94 kiWgs 98 
                      k+Wg+
  ORUFI09G13330.1 309 KVWGT 313
                      ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-27218312IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MERLMRKSNS LTQRSRSSKR PAEEADAAVA AGSASEGSDA SAEVARGAGS ASEGSDASAE  60
VARGHGSSPS PSKTPPPANP NPKSAAAPPS AVAAPASAAG SDSGAASDSP RAAGNPSGPR  120
SIEVNSDSED SALPLASDAY ADQAAAAGAG AGADSDDGNT SPLPPPRPSR AEAAAIKPIS  180
SRPMDPPPRR SAGGSEPRAK RPRSAAVASS AEHSKRPSRV WSQADELVIL RGLITYRTKR  240
GVLPGSTQDI GKLHSYIRGQ LSAKVSTTQL SDKVRRLKQK YQMLATRAKT GKEVFPTPHD  300
HNIYQLAKKV WGTMSTAGEG GGSGYDNADA GESEEEQYGR ESDDDMESGR DNRHRKNQRS  360
VPVTMANGNG TGIGAVNAIV RGRSEFEKGK DVYPYLWETV EELSSQHPTG AVFKKAFELL  420
EGSKAQVMEE KLRKFRLTEM RQQLRRMDLM KDTLSMVLDA LEMAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053930.0AP005393.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0488D02.
GenBankAP0055590.0AP005559.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1163_C07.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611802.10.0STOREKEEPER protein
TrEMBLA0A0E0QS760.0A0A0E0QS76_ORYRU; Uncharacterized protein
STRINGORUFI09G13330.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.15e-15DNA-binding storekeeper protein-related transcriptional regulator