PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G17230.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 500aa    MW: 53464.4 Da    PI: 6.5036
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G17230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.51.7e-054381537
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                      C+ ++e  + l+C+ +   lC  C  + H g       H
  ORUFI09G17230.1 43 SCDYCGEAAAALHCRADAARLCVACDRHVH-GanalsrrH 81
                     7******99*******************99.435555556 PP
2CCT42.42.6e-154614891644
              CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      +++K+irYesRK +A++R RvKGrFv+++
  ORUFI09G17230.1 461 RYDKHIRYESRKMRADTRTRVKGRFVRAT 489
                      79************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.7E-113986IPR000315B-box-type zinc finger
CDDcd000212.26E-84286No hitNo description
PROSITE profilePS501199.4994486IPR000315B-box-type zinc finger
PROSITE profilePS5101710.397446488IPR010402CCT domain
PfamPF062031.8E-9461488IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MARHLHAHTH PPTAPAARPS PPPPARAPWA WSPEPEGWMT WRSCDYCGEA AAALHCRADA  60
ARLCVACDRH VHGANALSRR HVRAPLCARC EARPAAARVA AVAGAGGCGG GGEARFLCAG  120
CADDDGAEAA RVPVVGFSGC PGAAELAASW GLDLGGGGGR DEFEEDPFFP EAGYPMLAAD  180
RVLRDMYVPC DPPPEVAAGG RGRRLKGDSL CHQLAELARR EMESAPAQAN SGSISPSARR  240
GSAAAIRHEA AAAAAAQRAT LPYKSTPVTE AAGCGDVGNG EQFTDDNELV WQRTAPSDPP  300
CQIWDFNLGK SRDHDEHSAL ELHFGPKDGG FMIKSYNDMI EEVSSSSRKD LQYIYDSTYS  360
FATEDIVSAN IYQLTPKQLS TATSGNRRHK NEQHGLTNDG PSSSRIVDVD RTLNSSPEEV  420
AAVLAGENCI TDQTVTGADQ RNSLKIDSKT IAMNRDNAMQ RYDKHIRYES RKMRADTRTR  480
VKGRFVRATD IFNVGGGDGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205890.0AK120589.1 Oryza sativa Japonica Group cDNA clone:J013145I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610775.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A0E0QTK70.0A0A0E0QTK7_ORYRU; Uncharacterized protein
STRINGORUFI09G17230.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.13e-24B-box type zinc finger protein with CCT domain