PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G18080.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 264aa MW: 27264 Da PI: 6.0301

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G18080.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	45.8	2.4e-14	55	147	35	115
TCP 35 LqdeLGfdkdsktieWLlqqakpaikeltgtssssa............sec.eaesssssasnsssg.....kaaksaakskksqksaasalnl 110 L++eLG+++ds+ti W +qq++pai+ +tg ++ +a +e+ +a++ g k++++ ++++ +++++ +al++ ORUFI09G18080.1 55 LTRELGHKSDSETIRWFMQQSEPAIDTATGMGTVPAittivdgilripTESpSAVAAAAR------GdeptpKRRSKLQPTRAATDDPVEALAM 142 9******************************77666333332222211111111111111......1223423333333666666666666777 PP TCP 111 akesr 115 a+ r ORUFI09G18080.1 143 AHPPR 147 77666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-9	55	108	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MSSNRKTSSL LISFRRSGQA GAAAQRVGRR ARRRRDGGGG ANSGDKLDCE TIRWLTRELG 60 HKSDSETIRW FMQQSEPAID TATGMGTVPA ITTIVDGILR IPTESPSAVA AAARGDEPTP 120 KRRSKLQPTR AATDDPVEAL AMAHPPRGLA PASSATPPTA TGGGAIPFIA MPATSDGGKQ 180 AMSPATVWMV PPGGAGAVNQ PIQYWAFQPN PDHANFAGAS SYNVGQNPGV HEASAADHAA 240 STGGGGGGED DEYEGMTDSS SDEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	28	35	RRARRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606460	0.0	AL606460.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	BX842605	0.0	BX842605.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612634.1	1e-104	transcription factor PCF2-like
Swissprot	A2YXQ1	1e-37	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	1e-37	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A0E0QTZ3	0.0	A0A0E0QTZ3_ORYRU; Uncharacterized protein
STRING	ORUFI09G18080.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-18	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]