PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI09G20970.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 336aa MW: 36335.9 Da PI: 7.0543

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI09G20970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37.9	4.5e-12	25	127	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikegekkr...tsesss 77 +W+++ + L+ea++ ++ +r+klk +W +++ + ++p+qCk+k+e+++kry+++ + + + ++++ ORUFI09G20970.1 25 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVsahcamenaaatgkPGSSTAKTPNQCKNKIESMKKRYRAESAAAARAgpaAAGAGP 118 5*****************************9999999999**99977778899****************99888776332466678 PP trihelix 78 tcpyfdqle 86 ++++f +++ ORUFI09G20970.1 119 SWRFFARMD 127 999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.7E-14	23	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDALPDAADA AQLAAAAAPP QKRDEWSESG IVRLLEAYEA KWLLRNRAKL KWSDWVDIAH 60 EVSAHCAMEN AAATGKPGSS TAKTPNQCKN KIESMKKRYR AESAAAARAG PAAAGAGPSW 120 RFFARMDGLL KGPAGSGQPQ AELSNSIDLR APPPAKVEVD VDADFVSQLA DAGPGALSEL 180 VSAYANGSIQ EKLDKVENSG HVEGRAAESD VNVSSPRIKE ANEDAEEVDK VWDMSKKRKN 240 TEFDIAKSIE LLASSFLKIE RARMDLYRET ERMRVEAEIK KGEMELKRTE IMAKTHLQIA 300 KLFAKRLKEC SSKTGGSSSV TAEVDNHAKK GENGSG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103673	0.0	AK103673.1 Oryza sativa Japonica Group cDNA clone:J033136A07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612002.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A0E0QV05	0.0	A0A0E0QV05_ORYRU; Uncharacterized protein
TrEMBL	Q653S1	0.0	Q653S1_ORYSJ; Os09g0558200 protein
STRING	ORUFI09G20970.1	0.0	(Oryza rufipogon)
STRING	OS09T0558200-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	6e-48	sequence-specific DNA binding transcription factors