PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI09G21220.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 128aa    MW: 13902.6 Da    PI: 12.7668
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI09G21220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.5e-08941212249
                      SSS--HHHHHHHHHHCTS-HHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFq 49 
                      + +ps+ +r+ LA++l+L+  qV vWFq
  ORUFI09G21220.1  94 STTPSTLRRRWLARQLNLKPPQVEVWFQ 121
                      679************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.4E-694121IPR009057Homeodomain-like
PfamPF000461.5E-594121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-695121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
XXXXXXXXXR AVPPVWPPLA ALEWRPRWAG PSGCRPPRPP PTARSPASAA SAARHLPPPP  60
LAAAATTRTP AADPARSSAS RRTKPPSSTT PSKSTTPSTL RRRWLARQLN LKPPQVEVWF  120
QTGGRERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-126CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0QV372e-70A0A0E0QV37_ORYRU; Uncharacterized protein
STRINGORUFI09G21220.13e-71(Oryza rufipogon)