PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G12060.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 215aa    MW: 23492.2 Da    PI: 10.1867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G12060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07148195348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       WT  E   lv++v + G g+W++  r +     Rt+ ++k++w+++l
  ORUFI10G12060.1 148 HWTLKEITELVKGVSKNGVGSWTKLKRDFFstSIRTAVHLKDKWRNLL 195
                      5****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.329141195IPR017877Myb-like domain
SuperFamilySSF466894.06E-13143204IPR009057Homeodomain-like
SMARTSM007173.1E-4145197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-9148196IPR009057Homeodomain-like
PfamPF002491.6E-5148195IPR001005SANT/Myb domain
CDDcd116601.32E-17149196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSPLLSIGGP AGAASSSHRG GGGGIVLAGG YGGAAGFWVE VGCGGRAGMD DMLYLGCEGE  60
IQQLLQGPRD ETDIYKCLAG ESYLLTTKET VTIQTPPNPI LNLLDFIPKY GSRCGRRCGG  120
KREPFSLKPL QLETTIFRRH HLRKNNEHWT LKEITELVKG VSKNGVGSWT KLKRDFFSTS  180
IRTAVHLKDK WRNLLKACGI KFTSKRKVAV HALHL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423920.0AK242392.1 Oryza sativa Japonica Group cDNA, clone: J080064A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613834.15e-97uncharacterized protein LOC9268141
TrEMBLA0A0E0QZP51e-157A0A0E0QZP5_ORYRU; Uncharacterized protein
STRINGORUFI10G12060.11e-157(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.17e-15TRF-like 6