PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G12920.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 503aa    MW: 54254.6 Da    PI: 7.2439
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G12920.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.4e-1969102134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++Cgtt+Tp+WR+gp+g++tLCnaC ++yr+ +
  ORUFI10G12920.1  69 CRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGK 102
                      *******************************976 PP
2GATA49.36.8e-16241274134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++CgttkTp WR gpd  ++LCnaCG + rk+ 
  ORUFI10G12920.1 241 CAHCGTTKTPAWRLGPDSRRKLCNACGNKERKRS 274
                      *******************************986 PP
3GATA47.72.1e-15430464135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++CgttkTp W +gpd   +LCnaCG  yrk +l
  ORUFI10G12920.1 430 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 464
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.05E-1461124No hitNo description
SMARTSM004011.4E-1663117IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.7566399IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-1467101IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-1368117No hitNo description
PfamPF003202.2E-1669102IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-11234275No hitNo description
SMARTSM004011.3E-8235286IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.492235267IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-11235273IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.05E-9240273No hitNo description
PfamPF003203.9E-14241274IPR000679Zinc finger, GATA-type
SMARTSM004010.15362408IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.814362381IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-4367381IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.9E-11423483No hitNo description
SMARTSM004011.5E-8424478IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.093424460IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-10428462IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.12E-10429478No hitNo description
PfamPF003201.5E-13430464IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MVVVDGLHDG GGGDLKALLD DAGVDDVAAR GGGGGGGEVE EEVERPSNED AFPAVEKMAT  60
AAAAKGLQCR HCGTTETPQW RHGPEGHRTL CNACSMRYRS GKLVPEYRPL RSPTFSPELH  120
SNRHHRVLQL RRRPGPQSAA PSPAAVARCG GEAKEEEEEL AWVSNKDAFA TVETTMAPSP  180
RVVETPPEHD HRPANIPTTS PEPHSDRPRR VVQLPRRLQE PSASANLAHA VAATARAGRE  240
CAHCGTTKTP AWRLGPDSRR KLCNACGNKE RKRSVVAATV VVGGGLRDDA AAIADEHLDG  300
GDLQALLDDV TLDDVAARGG GDAGEAKEEE EELEWLSNKD AFPTVETMSP APPENRTKAP  360
VPPAGWQCRH CGSTETPLWR ERDGPAEAEH VRKEETPPNI TPATKHRRIV DLLRCSTALN  420
TAATAVERRC THCGTTKTPA WLSGPDSRGK LCNACGKQYR KGRLVPEYRP LNCPTFSPEL  480
HSNAQAHRRR RESPVAIAIA GEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613898.10.0GATA-type transcription factor sreA
TrEMBLA0A0E0R0050.0A0A0E0R005_ORYRU; Uncharacterized protein
STRINGORUFI10G12920.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157091414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-24GATA transcription factor 1