PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G16240.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 313aa    MW: 32816.2 Da    PI: 8.4004
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G16240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY77.15.8e-2454105455
            YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 
                      +s  eq+Cyv+C +C+t+l+vsvPs+slf++vtvrCGhC+sll+vn++    
  ORUFI10G16240.1  54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLL 105
                      56789***************************************99987664 PP
2YABBY131.61e-40200267105170
            YABBY 105 edeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       +e +pr+    ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  ORUFI10G16240.1 200 AKEPSPRTNTavINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 267
                      44555665544489****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-2356107IPR006780YABBY protein
PfamPF046904.8E-39199267IPR006780YABBY protein
SuperFamilySSF470958.12E-8209260IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.8E-4216259IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSSSSSSSAS SAAAAAFRPA VVQREQQVVE EKFPAAAAAM REMAPPPVAA AAADSEQEQL  60
CYVHCHYCDT VLVVSVPSSS LFETVTVRCG HCSSLLTVNM RGLLLPTTAA AAPPPPPPPP  120
PPPPPPAAHF PHSLNLAPAN PPHHHSLLDE ISTANSPTQL LLEQHGLGGL MASAASCRNN  180
NSPAAAAAPP PPTSQGKAAA KEPSPRTNTA VINRPPEKRQ RVPSAYNRFI KDEIQRIKAG  240
NPDISHREAF SAAAKNWAHF PHIHFGLMPD HQGLKKTSLL PQDHQRKDGL LKEGLYAAAA  300
AAAAAANMGV APY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740150.0AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613818.10.0protein YABBY 3 isoform X1
SwissprotQ8L5560.0YAB3_ORYSJ; Protein YABBY 3
TrEMBLA0A0E0R1690.0A0A0E0R169_ORYRU; Uncharacterized protein
STRINGORUFI10G16240.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-44YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]