PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G01010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 480aa    MW: 53729.6 Da    PI: 6.8104
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G01010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.36.3e-23286347259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                      +Dg++WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  ORUFI11G01010.1 286 EDGFQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQKdKNDPPMFQVTYSNEHTCT 347
                      8***************************99999*******8761679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-23278347IPR003657WRKY domain
SuperFamilySSF1182903.01E-21279347IPR003657WRKY domain
SMARTSM007745.2E-33285348IPR003657WRKY domain
PfamPF031061.1E-24286346IPR003657WRKY domain
PROSITE profilePS5081117.167286349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSPKLVLEKK GYTQFTPHYI TWYCPDSFIL SKQCKSQCIN HGRYCAPDPE QDFSKGYDGK  60
DVVVQNLRQV CVYKVAKEHG KPWLWWDYVT DFAIRCPMKE KKYTKECADG VIKSLGKLDK  120
GAVLKAICAG FRETTEPAVC LSEVVKGVKF VGDGYTHCEA VAVREVAQVY ELIKTQQPLL  180
LVHQQPQQLA HGLLNHALRA LNVALSVMNQ PHASSSAAAA AVPVMSLIKA EAATPANSSS  240
PAADVAADNH VVGKPRRSSS AAKRRRINGE EYKSSSWSQF TPVPHEDGFQ WRKYGEKKIQ  300
GTHFTRSYFR CTYRDDRGCQ ATKQIQQKDK NDPPMFQVTY SNEHTCTTTR LINNINNPAA  360
LHNLTANPNG HHDSDDDDTI FTKMIKQEEQ AAWLPPPPPA DLATISNNFD ETPGLHVCQE  420
VPPSSSNSSV ISHYADEFDH HQMLETTVME EALGLGADLD DPYFYDPNLL LIYESLMNCY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-13286346968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235140.0AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616433.10.0probable WRKY transcription factor 70
TrEMBLA0A0E0R3F40.0A0A0E0R3F4_ORYRU; Uncharacterized protein
STRINGORUFI11G01010.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-19WRKY family protein