PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G04600.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 310aa    MW: 32725.3 Da    PI: 7.1654
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G04600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP40.59.8e-132713154137
              TCP  54 qakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqksaasalnlakesr....................akarararert 126
                      +a+pai ++tgt++++a+++  a+s +s+as+sss++aa++++ ++++q++ a++l ++++++                    a + +r+r+r+
  ORUFI11G04600.1  27 KAEPAIVAATGTGTIPANFSsLAVSLRSAASHSSSPRAAPFHHLQQQQQHDVAAMLGFHHHHHqllppppphqhpeptpqdpgAGEFMRKRYRE 120
                      79***************9999***************************************9999****************************** PP

              TCP 127 rekmriknkln 137
                      +++ +++++++
  ORUFI11G04600.1 121 ADDLFKDTSRQ 131
                      **999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-52791IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MIKDLRTLES WAKEKPEIEQ PALQGLKAEP AIVAATGTGT IPANFSSLAV SLRSAASHSS  60
SPRAAPFHHL QQQQQHDVAA MLGFHHHHHQ LLPPPPPHQH PEPTPQDPGA GEFMRKRYRE  120
ADDLFKDTSR QDPVDGATGA EAEQKARAAA AAAAPPPTAP SAMWAVGPNT TGATAAFWMQ  180
PAWAFPHGAG AGAAGNTVQA PLQFMSRSSF PTAMNATMAD NNNSSNNNLG MLAALNAGGG  240
GRSGEHQHQH EGKSPAEMDH QRRANGGGGE AGGAASSQFR MIINQFAIVR GFTSPVIYLN  300
HENPIKVAEN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718040.0AB071804.1 Oryza sativa Japonica Group mRNA for transcription factor PCF3, partial cds.
GenBankAC1205390.0AC120539.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616519.11e-112transcription factor PCF3
SwissprotQ53PH21e-113PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0E0R4W00.0A0A0E0R4W0_ORYRU; Uncharacterized protein
STRINGORUFI11G04600.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652