PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G05240.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 433aa    MW: 44742.7 Da    PI: 7.0299
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G05240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18365398134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ +  +
  ORUFI11G05240.1 365 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 398
                      *****************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.7E-17359409IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.231359397IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.18E-14361422No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15363398IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.60E-15364420No hitNo description
PfamPF003201.7E-16365399IPR000679Zinc finger, GATA-type
PROSITE patternPS003440365390IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MPKPTPSSSS FLDFTGGVDG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHVFFESLDV  60
ELFLPRGGPS RGAGEEDSKG AVERVAFGSS AAVESELGGV GGGGAGSEVS VPGGAGGGRG  120
EDMETKALDV KPVVGVGAGG AMGAHVAGGV GAPGAFPESK QLVPWPCAVG AGASAPGAAP  180
DNRLLALPDV RFDALTGGER GKTIPDSVSK NGLPTLPGVR SATPTAPPAT PFRLEWDHAA  240
APSSSATTTP SDSSLSSPPS LTSAFPRIAR VFPSRTKPRR RHTLRRQHWS LICPLHLVPV  300
AAAAAADDDD AAARGKSISE LNASASASAS AAADAPSTND GGGGSYHRRV VGRQRNRQVR  360
KDRRCSHCGT SETPQWRMGP DGPGTLCNAC GIRSKMDRLL PEYRPSTSPS FNGDEHSNRH  420
RKVLKLREKK VRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286440.0AC128644.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0009F15, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0R5390.0A0A0E0R539_ORYRU; Uncharacterized protein
STRINGORUFI11G05240.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.18e-21GATA transcription factor 7