PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI11G09500.4

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 910aa MW: 100823 Da PI: 6.3088

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI11G09500.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.8e-29	556	606	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ ORUFI11G09500.4 556 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 606 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	545	626	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-26	559	606	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.87E-24	803	898	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.8E-24	809	891	No hit	No description
SMART	SM00666	1.4E-25	812	894	IPR000270	PB1 domain
Pfam	PF00564	5.8E-19	812	893	IPR000270	PB1 domain
PROSITE profile	PS51745	26.274	812	894	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MLRRCSHPFL RYLQSVIKAV RIEEMDGGGT PDGDPVPDMD MLMLSSALDG LDSYTDLVAG 60 SSVVDSIFSA LTCFPPSQER LLHVSTAVGS SSRQDDADVS ITEEGTTRTR SDRAAGLASG 120 EPVAVGIGSV PKPFDGVTLT ERMLRALAML KEASGGEAIL VQVWMPVRNG EQHVLTTSDQ 180 PFLLDQKLTG YREVSRQFTF SAEEGPGLFP GLPGRVFMSG MPEWTSNVMY YHGSEYLRVD 240 YARRHEVRGS LAMPVFNSSG GSCCAVLEVV MTREKDNFCL EMVNVSNALQ SYSRDQKLAL 300 MEIFDVLQAV CQAHLLPLAL AWIPVCSKRD VLVSIEYGAK FGKRNKEVLC IEESACYVND 360 TRVRDFVQVC AEHPLEKGQG VAGNAYLSNN PFFSSDVKDY DMHAYPLVNH ARKFGLHAAV 420 AIRLRSTYTK NDDYVLEFFL PVLCKGGEEQ QLLLDSISTT MRKVCKSLRT VSDAELKEDV 480 TRKPSNENRS GTRCPSPVNL IYSGREIDVS NETKTNTPLE YQIEGIDEQL SDTKSTNKLI 540 KCSNASDGEK RRSSTEKSVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS 600 RKIKKVNRSL KKIQNVISSV HGVEGVLKYD PSTGCLISSV SPSIEPVLMN VEHKGSDPLP 660 IESELPHLNF EPDCDAYRRE HAGQDVLHKL QNKQNGEINF DMDDGELFRN SHSTRTLSGA 720 FCEDMSNGLY VAREMTCVAK TGTRTERLEH KPSSRDSFSA PQEYRMESET DKSNKNSKQS 780 LPSSSSMTDC STSSGETFKS IKSQSANESN TTVVVKASYK NDTIRFKLLP SMKYEQLLEE 840 IAKRLKLSVG VFQLKYKDDE GDWVILASDA DLQECLEILD TTRLHILKLQ VQDVVCPIGS 900 SSGSCSMLRP

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MLRRCSHPFL RYLQSVIKAV RIEEMDGGGT PDGDPVPDMD MLMLSSALDG LDSYTDLVAG  60
SSVVDSIFSA LTCFPPSQER LLHVSTAVGS SSRQDDADVS ITEEGTTRTR SDRAAGLASG  120
EPVAVGIGSV PKPFDGVTLT ERMLRALAML KEASGGEAIL VQVWMPVRNG EQHVLTTSDQ  180
PFLLDQKLTG YREVSRQFTF SAEEGPGLFP GLPGRVFMSG MPEWTSNVMY YHGSEYLRVD  240
YARRHEVRGS LAMPVFNSSG GSCCAVLEVV MTREKDNFCL EMVNVSNALQ SYSRDQKLAL  300
MEIFDVLQAV CQAHLLPLAL AWIPVCSKRD VLVSIEYGAK FGKRNKEVLC IEESACYVND  360
TRVRDFVQVC AEHPLEKGQG VAGNAYLSNN PFFSSDVKDY DMHAYPLVNH ARKFGLHAAV  420
AIRLRSTYTK NDDYVLEFFL PVLCKGGEEQ QLLLDSISTT MRKVCKSLRT VSDAELKEDV  480
TRKPSNENRS GTRCPSPVNL IYSGREIDVS NETKTNTPLE YQIEGIDEQL SDTKSTNKLI  540
KCSNASDGEK RRSSTEKSVS LSVLQQYFSG SLKDAAKSIG VCPTTLKRIC RQHGISRWPS  600
RKIKKVNRSL KKIQNVISSV HGVEGVLKYD PSTGCLISSV SPSIEPVLMN VEHKGSDPLP  660
IESELPHLNF EPDCDAYRRE HAGQDVLHKL QNKQNGEINF DMDDGELFRN SHSTRTLSGA  720
FCEDMSNGLY VAREMTCVAK TGTRTERLEH KPSSRDSFSA PQEYRMESET DKSNKNSKQS  780
LPSSSSMTDC STSSGETFKS IKSQSANESN TTVVVKASYK NDTIRFKLLP SMKYEQLLEE  840
IAKRLKLSVG VFQLKYKDDE GDWVILASDA DLQECLEILD TTRLHILKLQ VQDVVCPIGS  900
SSGSCSMLRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064859	0.0	AK064859.1 Oryza sativa Japonica Group cDNA clone:J013000H14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616880.1	0.0	protein NLP2-like isoform X1
Refseq	XP_015616881.1	0.0	protein NLP2-like isoform X1
TrEMBL	A0A0E0R6P4	0.0	A0A0E0R6P4_ORYRU; Uncharacterized protein
STRING	ORUFI11G09500.2	0.0	(Oryza rufipogon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein