PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G10800.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 558aa    MW: 59665.5 Da    PI: 6.1653
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G10800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.36e-11167223155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+ ++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  ORUFI11G10800.1 167 SIYRGVTKHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 223
                      57*******************4444.2455535555.779999**************98 PP
2AP251.23.1e-16266317155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  ORUFI11G10800.1 266 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 317
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-14167233IPR016177DNA-binding domain
CDDcd000188.27E-19167233No hitNo description
PfamPF008472.7E-8167223IPR001471AP2/ERF domain
SMARTSM003805.7E-23168237IPR001471AP2/ERF domain
PROSITE profilePS5103217.122168231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-11168232IPR001471AP2/ERF domain
PRINTSPR003672.6E-6169180IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18266327IPR016177DNA-binding domain
CDDcd000181.86E-24266327No hitNo description
PfamPF008473.9E-11266317IPR001471AP2/ERF domain
PROSITE profilePS5103218.834267325IPR001471AP2/ERF domain
SMARTSM003806.0E-33267331IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17267326IPR001471AP2/ERF domain
PRINTSPR003672.6E-6307327IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MASITNWLGF SSSSFSGAGA DPVLPHPPLQ EWGSAYEGGG TVAAAGGEET AAPKLEDFLG  60
MQVQQETAAA AAGHGRGGSS SVVGLSMIKN WLRSQPPPAV VGGEDAMMAL AVSTSASPPV  120
DATVPACISP DGMGSKAADG GGAAEAAAAA AAQRMKAAMD TFGQRTSIYR GVTKHRWTGR  180
YEAHLWDNSC RREGQTRKGR QGGYDKEEKA ARAYDLAALK YWGTTTTTNF PVSNYEKELD  240
EMKHMNRQEF VASLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFGT  300
QEEAAEAYDI AAIKFRGLNA VTNFDMSRYD VKSIIESSNV PIGTGTTRRL KDSSDHTDNV  360
MDINVNTEPN NVVSSHFTNG VGNYGSQHYG YSGWSPISMQ PIPSHSLGYT HNFFQQSDVP  420
DVTGFVDAPS RSSDSYSFSS LGYTHNFFQQ SDVPDVTGFI DAPSRSSDSY SFRYNGTNGF  480
HGLPGGISYA MPVATAVDQG QGIHGYGEDG VAGIDTTHDL YGSRNVYYLS EGSLVADVEK  540
EGDYGQSVGG NSWVLPTP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2876210.0AK287621.1 Oryza sativa Japonica Group cDNA, clone: J065066I09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876947.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-125BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0E0R7650.0A0A0E0R765_ORYRU; Uncharacterized protein
STRINGORUFI11G10800.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-116AP2 family protein