PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G15370.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 176aa    MW: 19871.7 Da    PI: 6.8055
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G15370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS23.85.1e-08337165200
             GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                      L k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gE
  ORUFI11G15370.1   3 LMKEAERLDVPFQFNP-VVSRLDALDVESLRVKTGE 37 
                      8899************.7****************99 PP
2GRAS95.11.1e-2954171234360
             GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                       sPkv+vv+ qea+hn++ + erf+eal+yy+alfd le++++r s e + vEr llg+ei+n+         e he+le+W  rle aGF+ +
  ORUFI11G15370.1  54 ASPKVMVVTKQEASHNAALLTERFVEALNYYAALFDGLEVGAARGSVEHTRVERWLLGEEIMNI---------EWHERLERWVGRLEGAGFGRI 138
                      58************************************************************98.........458999*************** PP

             GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvl 360
                      pls++a  qa+++ +  + dg++v ee+g l+l
  ORUFI11G15370.1 139 PLSYYALLQARRVAQGLGCDGFKVREEKGNLFL 171
                      ******************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.5191165IPR005202Transcription factor GRAS
PfamPF035141.8E-5337IPR005202Transcription factor GRAS
PfamPF035143.8E-2754171IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MALMKEAERL DVPFQFNPVV SRLDALDVES LRVKTGERRS QESGLSPSKS RADASPKVMV  60
VTKQEASHNA ALLTERFVEA LNYYAALFDG LEVGAARGSV EHTRVERWLL GEEIMNIEWH  120
ERLERWVGRL EGAGFGRIPL SYYALLQARR VAQGLGCDGF KVREEKGNLF LFFLIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-177171183365Protein SCARECROW
5b3h_A8e-177171182364Protein SCARECROW
5b3h_D8e-177171182364Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241511e-133AC124151.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0019E05, complete sequence.
GenBankAP0149671e-133AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819415.15e-88scarecrow-like protein 3
RefseqXP_025819416.15e-88scarecrow-like protein 3
SwissprotQ9LPR82e-36SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0E0R8R41e-124A0A0E0R8R4_ORYRU; Uncharacterized protein
STRINGORUFI11G15370.11e-125(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.17e-39scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]