PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI11G24640.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 237aa    MW: 26575.4 Da    PI: 5.3692
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI11G24640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.28e-241879159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                     +dDg++W KYGqK++ g+ +prsY+rC ++   gC ++k+v+ +++d ++++++Y geH+++
  ORUFI11G24640.1 18 VDDGFSWVKYGQKDILGTMYPRSYFRCIHRqtkGCLATKQVQPTDDDHQILDVIYYGEHTCD 79
                     59**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-241280IPR003657WRKY domain
PROSITE profilePS5081119.4741381IPR003657WRKY domain
SuperFamilySSF1182903.92E-231680IPR003657WRKY domain
SMARTSM007747.8E-361880IPR003657WRKY domain
PfamPF031065.9E-241979IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MPSRETLRRI RVKVSSTVDD GFSWVKYGQK DILGTMYPRS YFRCIHRQTK GCLATKQVQP  60
TDDDHQILDV IYYGEHTCDQ SARSDDRQLK SSRPAASSNL QEPQQPGLEQ SRPAAKRRRK  120
TVRWKTQVRV SSVQDIQRRD GDPLLFDVVY HGDHTCSERA SLNEQVTWPR SSASSTEQSS  180
TITYTAAAGS VEDDEEGVTS ATNFLSMDDM LDLGGGDVID MAFPSFDFDA IDALLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-1618771475Disease resistance protein RRS1
5w3x_D8e-1618771475Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0RC251e-175A0A0E0RC25_ORYRU; Uncharacterized protein
STRINGORUFI11G24640.11e-176(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-24WRKY DNA-binding protein 30