PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G00130.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 506aa    MW: 55478.6 Da    PI: 7.8031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G00130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31382438360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei+Y+geHnh+k
  ORUFI12G00130.1 382 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 438
                      9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540012.35E-4211227No hitNo description
PROSITE profilePS5060013.7819183IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1302.9E-683177No hitNo description
PfamPF029028.3E-690183IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.801.7E-27374439IPR003657WRKY domain
PROSITE profilePS5081123.72375439IPR003657WRKY domain
SuperFamilySSF1182901.83E-24377439IPR003657WRKY domain
SMARTSM007741.7E-34380438IPR003657WRKY domain
PfamPF031062.3E-24382437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MAHGGGEEEE ERVLSHGDVV LLRCDLTILR GPHFLNDRII AFYLAHLAAD HHDDDLLLLP  60
PSVPYLLSNL PDPASVAAVA DPLRLASRRL VLLPVNDNPD VSHAEGGSHW TLLVLDNSNA  120
VSGPRFVHHD SLPPTNLPAA RRLAAVLRPL LPASAIPLIE GPTPRQTNGY DCGVFVLAVA  180
RAICNWWPTR ARHSNSDSDW LEAVKREVNA DSVKAMRTQL LQLIHTLIQN NTTTNQHSPS  240
TQLPSHPSIA STSLPVTAQD FGTWCDMQSH KKVAAVKPVA SRPSSRLRSF SMLQEDSTAI  300
DSPRVTSLEE IILRRPKATR FTHPLSNSST EIAATRLEDS GTHTAYDQKK ADTGKGACWD  360
NLTVSQSVRK PNVSAKNSLS YDGYSWRKYG QKQVKGSEFP RSYYKCTHPT CPVKRKVEMT  420
PDGRIAEIVY NGEHNHPKPH PPRKPTLSTS VETLVATNDA GLENKLEGCD QAIGSDAVVE  480
ALRGGCHCLD GFRNGNEISD CKKRSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2bkq_A9e-26131845175SENTRIN-SPECIFIC PROTEASE 8
2bkq_B9e-26131845175SENTRIN-SPECIFIC PROTEASE 8
2bkq_C9e-26131845175SENTRIN-SPECIFIC PROTEASE 8
2bkq_D9e-26131845175SENTRIN-SPECIFIC PROTEASE 8
2bkr_A9e-26131845175SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418600.0AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698188.10.0PREDICTED: uncharacterized protein LOC102718700
TrEMBLA0A0E0RCI20.0A0A0E0RCI2_ORYRU; Uncharacterized protein
STRINGORUFI12G00130.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.15e-29WRKY family protein