PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G00130.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 434aa    MW: 47500.4 Da    PI: 7.0565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G00130.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31310366360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve +  d+++ ei+Y+geHnh+k
  ORUFI12G00130.2 310 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 366
                      9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.55E-4211227No hitNo description
PROSITE profilePS5060013.7819183IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1302.2E-683177No hitNo description
PfamPF029028.2E-690182IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.801.3E-27302367IPR003657WRKY domain
PROSITE profilePS5081123.72303367IPR003657WRKY domain
SuperFamilySSF1182901.44E-24305367IPR003657WRKY domain
SMARTSM007741.7E-34308366IPR003657WRKY domain
PfamPF031061.8E-24310365IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0019784Molecular FunctionNEDD8-specific protease activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAHGGGEEEE ERVLSHGDVV LLRCDLTILR GPHFLNDRII AFYLAHLAAD HHDDDLLLLP  60
PSVPYLLSNL PDPASVAAVA DPLRLASRRL VLLPVNDNPD VSHAEGGSHW TLLVLDNSNA  120
VSGPRFVHHD SLPPTNLPAA RRLAAVLRPL LPASAIPLIE GPTPRQTNGY DCGVFVLAVA  180
RAICNWWPTR ARHSNSDSDW LEAVKREVNA DSVKAMRTQL LQLIHTLIQN NTTTNQHSPS  240
TQLPSHPSIA STSLPVTAQD FGTWLEDSGT HTAYDQKKAD TGKGACWDNL TVSQSVRKPN  300
VSAKNSLSYD GYSWRKYGQK QVKGSEFPRS YYKCTHPTCP VKRKVEMTPD GRIAEIVYNG  360
EHNHPKPHPP RKPTLSTSVE TLVATNDAGL ENKLEGCDQA IGSDAVVEAL RGGCHCLDGF  420
RNGNEISDCK KRSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2bkq_A6e-26131845175SENTRIN-SPECIFIC PROTEASE 8
2bkq_B6e-26131845175SENTRIN-SPECIFIC PROTEASE 8
2bkq_C6e-26131845175SENTRIN-SPECIFIC PROTEASE 8
2bkq_D6e-26131845175SENTRIN-SPECIFIC PROTEASE 8
2bkr_A6e-26131845175SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418600.0AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619786.10.0uncharacterized protein LOC4351243
TrEMBLA0A0E0RCI30.0A0A0E0RCI3_ORYRU; Uncharacterized protein
STRINGONIVA12G00200.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.13e-25WRKY DNA-binding protein 3