PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G00880.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 141aa    MW: 15502.8 Da    PI: 11.7584
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G00880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP87.72.6e-2715125297
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesss 79 
                      ag kd+hsk+ T++g+RdR vRls++ a+ f+d+qd+LG+d++sk+ieW +++a +ai++  ++                            ++
  ORUFI12G00880.1  15 AGEKDKHSKVVTSRGLRDRCVRLSVPMAIAFYDIQDRLGVDQPSKAIEWHIRAAAAAIDAFLSLdcslvlpnaaqlltrwR-----------RR 97 
                      789*************************************************************77766544444444331...........22 PP

              TCP  80 ssasnsssg..........kaaksaaks 97 
                       s++++s++          ++ +++ k+
  ORUFI12G00880.1  98 PSSGQPSEEqartrkatvaASPRKSGKK 125
                      2222222221111111111222222211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-2816127IPR005333Transcription factor, TCP
PROSITE profilePS5136927.2721775IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MAAAWRTSRV ACVVAGEKDK HSKVVTSRGL RDRCVRLSVP MAIAFYDIQD RLGVDQPSKA  60
IEWHIRAAAA AIDAFLSLDC SLVLPNAAQL LTRWRRRPSS GQPSEEQART RKATVAASPR  120
KSGKKRRKTR SGCAAWSASR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-182273152Putative transcription factor PCF6
5zkt_B7e-182273152Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123127KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005100.0BX000510.1 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619107.13e-95transcription factor PCF8-like
SwissprotA2ZMR94e-37PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A0E0RCU22e-95A0A0E0RCU2_ORYRU; Uncharacterized protein
STRINGORUFI12G00880.13e-96(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.23e-18TCP family protein