PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G04780.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 326aa    MW: 34686.7 Da    PI: 10.6732
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G04780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.26.2e-156395133
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                     C nC + +Tp+WR+gp g +tLCnaCG++ r  
  ORUFI12G04780.1 63 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 95
                     99**************************99865 PP
2GATA57.22.2e-18191225135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+t+Tp+WR+gp g  tLCnaCG++yr  +l
  ORUFI12G04780.1 191 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 225
                      *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012178.6E-141329No hitNo description
SuperFamilySSF577161.14E-125698No hitNo description
SMARTSM004015.0E-1257108IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.0975796IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-136195IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.84E-96296No hitNo description
PROSITE patternPS0034406388IPR000679Zinc finger, GATA-type
PfamPF003202.8E-126394IPR000679Zinc finger, GATA-type
PRINTSPR012178.6E-14113129No hitNo description
PRINTSPR012178.6E-14132149No hitNo description
PRINTSPR012178.6E-14153178No hitNo description
PROSITE profilePS5011412.716185221IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-16185235IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-15187247No hitNo description
Gene3DG3DSA:3.30.50.106.6E-15189223IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.20E-14190239No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003203.3E-16191225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAWWAFRLPV FRPPPPPPPP PAKNPVKEEE GVARVVVVVA PPPPVDPGEE EAGKRAAKRA  60
RRCLNCDAVE TPQWRSGPMG RSTLCNACGV RLRAVGSLPE HRAPAARTTT AAPASPPDSP  120
IWTPGHKPPS SSPDIYLVRR TPKLPVTRPP RTKQAPPTAP APAPPPPPPQ PASPKTKTKA  180
KAKKPKRKRS CVHCGSTETP QWREGPTGRG TLCNACGVRY RQGRLLPEYR PKGSPTFSPS  240
VHAANHRQVL ELRRQQRQST NPSTPPPPPV SAAEPIPDEQ KEEVVSVPVA AAAPATDGGA  300
ASSLDALLLD GPSAPLIVDG DDFLVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683060.0AK068306.1 Oryza sativa Japonica Group cDNA clone:J013136H07, full insert sequence.
GenBankAL9548250.0AL954825.3 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620068.10.0vegetative cell wall protein gp1
TrEMBLA0A0E0REB50.0A0A0E0REB5_ORYRU; Uncharacterized protein
TrEMBLQ0IPT90.0Q0IPT9_ORYSJ; Os12g0168800 protein
STRINGORUFI12G04780.10.0(Oryza rufipogon)
STRINGOS12T0168800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.23e-23GATA transcription factor 11