PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI12G05060.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 290aa MW: 29941.7 Da PI: 4.67

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI12G05060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	21.8	5.9e-07	28	122	54	125
TCP 54 qakpaikeltgtssssasec.......eaesssssasnsssgkaaksaa.kskksqksaasalnlakesr...............akararare 124 qa+pai+++tgt++++a+++ + ++s ssasn++ ++ ++ a +++++q++ +++l ++++ a a +r+r+ ORUFI12G05060.1 28 QAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRASPFPALAlHPHHQQHDVSAMLGYHHHLLpppqqqqespqdpggAGAFMRKRY 121 9****************88766666665566666666666666666666688888888888888887554566666666666655555555444 PP TCP 125 r 125 r ORUFI12G05060.1 122 R 122 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-5	28	95	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MAAAAVVGER RRRAVILVEG AAAVVVVQAE PAIIAATGTG TIPANFSSLN ISIRSGAASA 60 SSASNPNRAS PFPALALHPH HQQHDVSAML GYHHHLLPPP QQQQESPQDP GGAGAFMRKR 120 YREDLFKEDD DRQDPSAPKA REQQPTTPQA AAAAAAAAMW AVAPNTAAPG GAFWMLPVSA 180 SSAAAARPTE QPMWSFAGGG GGAATVQAPL QFMSTRVNYP GSAGAGMSDT NLGMLAALNA 240 YNRGGAGDQQ PQQQPEMDQQ GRNDDDDDDG DDSGDEDNGG ANNNNNNSSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL713933	0.0	AL713933.6 Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618822.1	1e-120	transcription factor PCF3-like
Swissprot	Q53PH2	3e-38	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A0E0REF1	0.0	A0A0E0REF1_ORYRU; Uncharacterized protein
STRING	ORUFI12G05060.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52