PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G13970.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 226aa    MW: 24311.3 Da    PI: 10.5395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G13970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-0790134755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ r RR+ri s+ +eL +l+P a    ++ +s ae+L+ A ++++ Lq
  ORUFI12G13970.1  90 AAARERRRRISSKTAELSRLIPGA----ARMNSTAEMLQAAARHVRLLQ 134
                      567999999**************8....577***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.98283133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-985143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-886142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-689139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-590134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSTATTRLGV RRPTPAPVFD FDRLLLGSSS GGGMVGDDVQ QQQQRWELPD AVFVRGAGAA  60
EAKKGGAAAS HDDHDDGRHH HHHNQAVQSA AARERRRRIS SKTAELSRLI PGAARMNSTA  120
EMLQAAARHV RLLQAQVGML ALIHSSGEAK AASSMAASRE HHQMMMMRAL LASGGVQERL  180
AGEGRCLVPT SLVRAIADDD AMATSNPALS RDVNRFKDSL DQQQQQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8318080.0AL831808.4 Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX2558750.0BX255875.3 Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664569.11e-47PREDICTED: transcription factor bHLH52-like
TrEMBLA0A0E0RHJ61e-160A0A0E0RHJ6_ORYRU; Uncharacterized protein
STRINGORUFI12G13970.11e-161(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.12e-21bHLH family protein