PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G19860.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 241aa    MW: 26123.2 Da    PI: 4.6568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G19860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-111071471155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +RR +iN+ + +L++l+P +    +k ++ a++L k+++Y+ksLq
  ORUFI12G19860.1 107 KRRCKINENLKTLQQLVPVC----DKSNNQASTLDKTIRYMKSLQ 147
                      8******************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.87496146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-5104152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-9107147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-11107152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-11107154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.49E-10107148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEMTSCYNDV DAGDMFAAAD YYSAGAGGDL FDMVWPGRRR REEDNTSGCL PLSPPPPPEL  60
AVDDQLPAGG DGGGGEPVAV AVAEDDDSGE RWTEDQVPTD EGICVMKRRC KINENLKTLQ  120
QLVPVCDKSN NQASTLDKTI RYMKSLQQHA QHEKTAAAAG VTCPFLPPPP SSALLVIVEE  180
GPTRPWDATA RSTSAAATSF DHHHHGALID KLLQVVQPYM LSLKTSVREN NAMVKPNFYH  240
S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317431e-130AL731743.2 Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-130AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-130CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806979.13e-16putative transcription factor bHLH056
TrEMBLA0A0E0RJL30.0A0A0E0RJL3_ORYRU; Uncharacterized protein
STRINGORUFI12G19860.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164341012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.18e-10bHLH family protein